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The map label for this gene is ydcM [C]

Identifier: 86608108

GI number: 86608108

Start: 629485

End: 630702

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0620

Alternate gene names: 86608108

Gene position: 629485-630702 (Clockwise)

Preceding gene: 86608106

Following gene: 86608111

Centisome position: 20.66

GC content: 56.9

Gene sequence:

>1218_bases
ATGAGCCAAGTCCTGAGCATATCCTGCAAGCTCAAGGTGTCCCCGTCGCAAGCCGCCAAATTGGACGAGACATTGGATGC
TTTCGGCCAAGCCTTGAATTGGGTCAACCAAAACACGCCAGAGAAAGTCGTCAACGCCGTTAAGCTCCAGTCTCTGTGCT
ACCGCGAAATCCGCGCCCGGTTCGGCTTGTCCAGTAACTTGGCAAGGACTACGTCCCGCTTACGCGACCAGCAGGTCTGC
AGACGGCTGGCCGGCGCCCGTAAAGTTGCCCGACAGAAAAACCGCCCCGTCAAAACGTTCAAGGGTGGCTTCGCTACCTA
CGATGCACGTATCTTTTCGTTCCGCGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGC
TGGCGATTGGCCGCTACCAGAGAGAACGGCTGGCGGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGC
TCCTACTCTATTCAGATCTGTGTGGAAACGGAGCCATCCCCACCGCAACGCACGGGTAGAGTGCTGGGGGTGGACTTGGG
GAGGACGGATATTGCCCATACGTCAGAGGGTGATAACTGGAATGGACAGCAGTTGAACCGAATCCGAGACCACTACTCCA
AGCTGAGGGCGGCACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGG
CTGTCTGGCAAGGAGAGACGCTTTCAAACGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCCAGGGCAAAGGCTAC
CAACAGCGCTATCGCCCTGGAAGACCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCGCGCAGCAAAGCCGAGCGGC
GCAGGGCCAACAGTTGGGCGTTCTACCAACTACGTCAATTTCTGGAATACAAGGCGAGGGTTGCAGGGGTTTCTCTGGTT
CTTGTGCCGCCTGCTTACACGTCGCAGACCTGTCACAAGTGTTTACACATCCATCCCGACCCTGCGCAATCCTACCGCAG
TGGAAAGAAGTTTAAGTGTGGACACTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTCTTGG
GGGCTGCCGTAAACCAGCCTGGAGGTCCGGGCTTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
CGGCAGCGCTCTTCTGTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGTCGGGTAGTTTACGTAGATCATCAGTAAAGTTGTGCCGATGGAGAGCACTACCAAAGCCGGCACCACCCGC
AGCAGGGATCCCCAAGGAAT

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSQVLSISCKLKVSPSQAAKLDETLDAFGQALNWVNQNTPEKVVNAVKLQSLCYREIRARFGLSSNLARTTSRLRDQQVC
RRLAGARKVARQKNRPVKTFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDG
SYSIQICVETEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQR
LSGKERRFQTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLV
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATES
PLRTA

Sequences:

>Translated_405_residues
MSQVLSISCKLKVSPSQAAKLDETLDAFGQALNWVNQNTPEKVVNAVKLQSLCYREIRARFGLSSNLARTTSRLRDQQVC
RRLAGARKVARQKNRPVKTFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDG
SYSIQICVETEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQR
LSGKERRFQTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLV
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATES
PLRTA
>Mature_404_residues
SQVLSISCKLKVSPSQAAKLDETLDAFGQALNWVNQNTPEKVVNAVKLQSLCYREIRARFGLSSNLARTTSRLRDQQVCR
RLAGARKVARQKNRPVKTFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGS
YSIQICVETEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQRL
SGKERRFQTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARVAGVSLVL
VPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATESP
LRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=258, Percent_Identity=28.6821705426357, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45534; Mature: 45402

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLSISCKLKVSPSQAAKLDETLDAFGQALNWVNQNTPEKVVNAVKLQSLCYREIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRLAGARKVARQKNRPVKTFKGGFATYDARIFSFREKDWT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHEEEECCCEE
VSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVETEPSPPQRTGR
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCC
VLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCEECCCCCCCC
DADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SQVLSISCKLKVSPSQAAKLDETLDAFGQALNWVNQNTPEKVVNAVKLQSLCYREIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLARTTSRLRDQQVCRRLAGARKVARQKNRPVKTFKGGFATYDARIFSFREKDWT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHEEEECCCEE
VSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVETEPSPPQRTGR
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCC
VLGVDLGRTDIAHTSEGDNWNGQQLNRIRDHYSKLRAALQRKASKGTRSSRRRCRQLLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLVLVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCEECCCCCCCC
DADLNGANVIALLGAAVNQPGGPGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]