Click here to switch to the map view.

The map label for this gene is yrbE [H]

Identifier: 86360767

GI number: 86360767

Start: 34128

End: 35162

Strand: Reverse

Name: yrbE [H]

Synonym: RHE_PF00033

Alternate gene names: 86360767

Gene position: 35162-34128 (Counterclockwise)

Preceding gene: 86360768

Following gene: 86360766

Centisome position: 5.47

GC content: 63.77

Gene sequence:

>1035_bases
ATGACCGGATTGAAAGGCGCGTTGATCGGCTGCGGCTTCTTTGCGATCAACCAGATGCATGCCTGGAAGGATGTCGACGG
CGCCGGCATCGTCGCGATCTGCGACCGCGATCCCGAGCGGCTGAAGATTGTCGGAGACCAGTTCGGCATCGTGCGGCGCT
ACAGCGATGCCGAGGCGATGTTTGCCGATGGCGGCTTCGATTTCGTCGATATCGCCACGACGGTTCAGAGCCACCGCGCT
CTCGTGGAAATGGCAGCGCGAAACAAGGTGCCGGCCATCTGCCAAAAGCCTTTCGCCAAGACGCTGGCGGATGCGAGGGC
GATGGTCGAGGCCTGCCGGGCTGCCGGCGTGGCGCTGATGGTGCACGAGAATTTCCGCTGGCAGACGCCGATACAGGCGG
TGCGCAAGGCGCTCGATGCCGGCGCCATCGGCACGCCCTTCTGGGGCCGCTTTTCCTTCCGCTCGGGTTATGACGTCTTC
TCCGGCCAACCCTACCTCGCCGAAGGCGAGCGTTTCATCATCGAGGATCTCGGCATCCATACGCTCGATATCGCCCGCTA
TATCCTCGGCGACGTCAGCGGGTTGACGGCCCGCACCAAGCGGGTCAATCCCAGGATCAGGGGCGAGGATGTCGCGACCA
TCCTTCTCGATCATGAGAACGGCGCCACCTCGGTCGTCGACGTCAGCTACGCCACCAGGCTACCGAAAGAACCCTTCCCC
GAGACGCTGATCGAACTCGACGGCTCCGAAGGCACGATCCGGCTGACCCAGGGCTACGGCCTGGAGATCACCAACGGCAG
GGGCACGACCAGGATGGATGTTGCGCCGAAGCTGCTGTCCTGGGCCTCGCGGCCCTGGCACAACATCCAGGAGAGCGTCT
TCGCGATAGAGCAGCATTGGGTCGACCAACTCAAGCGCGGCGCGGAGCACTCGACCTCGGGCGCCGACAATCTGAAGACC
TTCGCACTCGTCGAGGCGGCCTACGACAGCGCGGCACAAGGCCGAACGATCGATGTTCGGGCGATGCTGCGATGA

Upstream 100 bases:

>100_bases
ATCAAGGGCCTCGTGATCATCATCGCCGTGGTCGTCGACCAGGCGCAGCGCCGCCTGCAGCAGCGCGTCACCCTAATGCA
GATGGCAAAGGCAGGTTGAA

Downstream 100 bases:

>100_bases
CCGCCGATGCGTTCCAGCTCTACGGTACTCGCGTTGAGGAAAGGCCGACGGTTCGCCTGACGGCGGGAAAGCTAACGGCC
GATCTCGCCGATGGCAATCT

Product: oxidoreductase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTGLKGALIGCGFFAINQMHAWKDVDGAGIVAICDRDPERLKIVGDQFGIVRRYSDAEAMFADGGFDFVDIATTVQSHRA
LVEMAARNKVPAICQKPFAKTLADARAMVEACRAAGVALMVHENFRWQTPIQAVRKALDAGAIGTPFWGRFSFRSGYDVF
SGQPYLAEGERFIIEDLGIHTLDIARYILGDVSGLTARTKRVNPRIRGEDVATILLDHENGATSVVDVSYATRLPKEPFP
ETLIELDGSEGTIRLTQGYGLEITNGRGTTRMDVAPKLLSWASRPWHNIQESVFAIEQHWVDQLKRGAEHSTSGADNLKT
FALVEAAYDSAAQGRTIDVRAMLR

Sequences:

>Translated_344_residues
MTGLKGALIGCGFFAINQMHAWKDVDGAGIVAICDRDPERLKIVGDQFGIVRRYSDAEAMFADGGFDFVDIATTVQSHRA
LVEMAARNKVPAICQKPFAKTLADARAMVEACRAAGVALMVHENFRWQTPIQAVRKALDAGAIGTPFWGRFSFRSGYDVF
SGQPYLAEGERFIIEDLGIHTLDIARYILGDVSGLTARTKRVNPRIRGEDVATILLDHENGATSVVDVSYATRLPKEPFP
ETLIELDGSEGTIRLTQGYGLEITNGRGTTRMDVAPKLLSWASRPWHNIQESVFAIEQHWVDQLKRGAEHSTSGADNLKT
FALVEAAYDSAAQGRTIDVRAMLR
>Mature_343_residues
TGLKGALIGCGFFAINQMHAWKDVDGAGIVAICDRDPERLKIVGDQFGIVRRYSDAEAMFADGGFDFVDIATTVQSHRAL
VEMAARNKVPAICQKPFAKTLADARAMVEACRAAGVALMVHENFRWQTPIQAVRKALDAGAIGTPFWGRFSFRSGYDVFS
GQPYLAEGERFIIEDLGIHTLDIARYILGDVSGLTARTKRVNPRIRGEDVATILLDHENGATSVVDVSYATRLPKEPFPE
TLIELDGSEGTIRLTQGYGLEITNGRGTTRMDVAPKLLSWASRPWHNIQESVFAIEQHWVDQLKRGAEHSTSGADNLKTF
ALVEAAYDSAAQGRTIDVRAMLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87082405, Length=259, Percent_Identity=25.0965250965251, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787574, Length=203, Percent_Identity=26.1083743842365, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37772; Mature: 37641

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLKGALIGCGFFAINQMHAWKDVDGAGIVAICDRDPERLKIVGDQFGIVRRYSDAEAM
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCEE
FADGGFDFVDIATTVQSHRALVEMAARNKVPAICQKPFAKTLADARAMVEACRAAGVALM
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
VHENFRWQTPIQAVRKALDAGAIGTPFWGRFSFRSGYDVFSGQPYLAEGERFIIEDLGIH
EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCH
TLDIARYILGDVSGLTARTKRVNPRIRGEDVATILLDHENGATSVVDVSYATRLPKEPFP
HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCC
ETLIELDGSEGTIRLTQGYGLEITNGRGTTRMDVAPKLLSWASRPWHNIQESVFAIEQHW
HHHHEECCCCCEEEEECCCCEEEECCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VDQLKRGAEHSTSGADNLKTFALVEAAYDSAAQGRTIDVRAMLR
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECC
>Mature Secondary Structure 
TGLKGALIGCGFFAINQMHAWKDVDGAGIVAICDRDPERLKIVGDQFGIVRRYSDAEAM
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCEE
FADGGFDFVDIATTVQSHRALVEMAARNKVPAICQKPFAKTLADARAMVEACRAAGVALM
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
VHENFRWQTPIQAVRKALDAGAIGTPFWGRFSFRSGYDVFSGQPYLAEGERFIIEDLGIH
EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCH
TLDIARYILGDVSGLTARTKRVNPRIRGEDVATILLDHENGATSVVDVSYATRLPKEPFP
HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCC
ETLIELDGSEGTIRLTQGYGLEITNGRGTTRMDVAPKLLSWASRPWHNIQESVFAIEQHW
HHHHEECCCCCEEEEECCCCEEEECCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VDQLKRGAEHSTSGADNLKTFALVEAAYDSAAQGRTIDVRAMLR
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]