Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
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Accession | NC_007766 |
Length | 642,517 |
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The map label for this gene is 86360766
Identifier: 86360766
GI number: 86360766
Start: 32287
End: 34131
Strand: Reverse
Name: 86360766
Synonym: RHE_PF00032
Alternate gene names: NA
Gene position: 34131-32287 (Counterclockwise)
Preceding gene: 86360767
Following gene: 86360765
Centisome position: 5.31
GC content: 64.66
Gene sequence:
>1845_bases ATGACCGCCGATGCGTTCCAGCTCTACGGTACTCGCGTTGAGGAAAGGCCGACGGTTCGCCTGACGGCGGGAAAGCTAAC GGCCGATCTCGCCGATGGCAATCTCCGCACGATCCGCTACGACGGCGTCGAGGTGCTGCGGGCGATTTCCTATCTCGTCC GCGACCGGGACTGGGGCACTTATAGTCCTGAGATCGCGGGCCTCAGGATTGAGCAGGGTAAGGATCGTTTTGAGGTTAGC TATCGGGCTCGCTGCGAGGGACCTGATGAGACGGCGCTCGTGATCGGGGTCCGCATCAGCGGCGATCAGGACCGGCTCGA TTTCGAGGCCGAAGCTACCTCACGGACCGGCTTCGATACCAACCGCTGCGGCTTCTGCATCCTGCATCCGATCGTCGGTG TTGCCGGTTCGCCGGCAGCGGTCGAACATGTCGACGGACAGATCGAGGCGACGCGTTTTCCGGATCTCATCGAGCCCTGG CAGCCGATCAAGGACATGCGCGCCATCACCCATCAGGTCATGCCTGATGTGAGCGCGGAATGCCGGATGGAGGGCGACAC CTTCGAAATGGAGGACCAGCGCAACTGGTCCGATGCCTCCTACAAGACCTATGTCAGGCCGCTCGCTTTGCCCTGGCCTT ACCAGATCCCGGCGAACCAGCCTGTCCGGCAGAAGACGTCGCTCATCATCAGCGATACCAGCCGCTCCGTCACGCCGCCG GTCGCCGCGCAGAGCGGAGTCACACGACTCGAATTCGGCGCGCGAACCGGCACAATGCCCGGTATCGGTGTGATCGTGAC GCCCGAGGAGGCCGATGCGACGCTGACGGCTAGGTCCCTCCTGACGGAGATCGCGCTTCGCGAGCTTCTCTTTCATTTCG ATCCCGACGCCGGGCATGGCGCCGACGCATTGGAAAACTTCGCCGCGATCGCCGCTCTCCATCCCGGCCGCTCGACGCTG GAGATCGCGCTTCCCTGCAAATCGTCGCCGGCGGGCGAGGCGGCCGAGATCGCGCGGCAGATGCAGATTGCGGGCTTCAA GCCGGATGCGATCTTGATCTCGCCTTCCGTCGACCGGCAATCGACGCCGCCCGGCAGCAAATGGCCGGACTGCCCTCCCC TCGAAGAGGTCTATGCCGCGGCCCGCGCCGCCTTTCCCGGCATTCGCATCGGCGGCGGTATGCTGAGCTATTTCACCGAG CTCAACCGCAAGCGCGTGCCGGCAGGCGAGATCGATTTCGTCAGCCATTGCACCAACCCAATCGTGCATGCCGCCGACGA TCTCAGCGTCATGCAGACATTGGAGGCGCTGCCCTTCATCACGCGCTCCGTCCGGGCGATCTACGACGACAAGCCCTATC GCATCGGTCCCTCGACGATCCCGATGCGGCAAAATCCCTATGGCAGCCGCACGATGGACAATCCGTTCGGCGGACGCATT CCGATGGCGAACCGCGATCCCCGCCACAACGGCCGTTTCGCCGAGGCCTTCGCGCTCGGCTATGCGATCCGGGTGCTGGA TGCCGGTCTCGAATGCCTGACACTTTCGGCGCTGACCGGTCCTTTCGGCCTGATCGCCGGTCCCGATGAACCGGTCGAAC GAGGCGGGCGGCGGCCGCTCTTCAACACGGTGCAGACCTTGTCGGCGCTCGCGGGTGCATCCTGGCAGGAATGCCTCTCG TCCTCGCCCTCCGAAGTGCTGTCTTTCGTCGCAAGGGACGCCGCTGGCGCCAAGCTCTACGTGGTCAATCTCACAGGCGA AGAGCGAAGGGTGGATGGGGGCGCACTCGCCGAAGAGCTGCGGCTCGCGCCCTTCGCGACGGCCGCCTTGCCGCTGGCGG ATTGA
Upstream 100 bases:
>100_bases CGACCTCGGGCGCCGACAATCTGAAGACCTTCGCACTCGTCGAGGCGGCCTACGACAGCGCGGCACAAGGCCGAACGATC GATGTTCGGGCGATGCTGCG
Downstream 100 bases:
>100_bases CCTCTGGCCCGCCCGTCGCAGTGGGAGCTCGTTCTGGGGAGGATAGGCGTGAAGACGAAGAAGCTAATCAATGCAGGCGC GGATGCCGTCGATGAGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MTADAFQLYGTRVEERPTVRLTAGKLTADLADGNLRTIRYDGVEVLRAISYLVRDRDWGTYSPEIAGLRIEQGKDRFEVS YRARCEGPDETALVIGVRISGDQDRLDFEAEATSRTGFDTNRCGFCILHPIVGVAGSPAAVEHVDGQIEATRFPDLIEPW QPIKDMRAITHQVMPDVSAECRMEGDTFEMEDQRNWSDASYKTYVRPLALPWPYQIPANQPVRQKTSLIISDTSRSVTPP VAAQSGVTRLEFGARTGTMPGIGVIVTPEEADATLTARSLLTEIALRELLFHFDPDAGHGADALENFAAIAALHPGRSTL EIALPCKSSPAGEAAEIARQMQIAGFKPDAILISPSVDRQSTPPGSKWPDCPPLEEVYAAARAAFPGIRIGGGMLSYFTE LNRKRVPAGEIDFVSHCTNPIVHAADDLSVMQTLEALPFITRSVRAIYDDKPYRIGPSTIPMRQNPYGSRTMDNPFGGRI PMANRDPRHNGRFAEAFALGYAIRVLDAGLECLTLSALTGPFGLIAGPDEPVERGGRRPLFNTVQTLSALAGASWQECLS SSPSEVLSFVARDAAGAKLYVVNLTGEERRVDGGALAEELRLAPFATAALPLAD
Sequences:
>Translated_614_residues MTADAFQLYGTRVEERPTVRLTAGKLTADLADGNLRTIRYDGVEVLRAISYLVRDRDWGTYSPEIAGLRIEQGKDRFEVS YRARCEGPDETALVIGVRISGDQDRLDFEAEATSRTGFDTNRCGFCILHPIVGVAGSPAAVEHVDGQIEATRFPDLIEPW QPIKDMRAITHQVMPDVSAECRMEGDTFEMEDQRNWSDASYKTYVRPLALPWPYQIPANQPVRQKTSLIISDTSRSVTPP VAAQSGVTRLEFGARTGTMPGIGVIVTPEEADATLTARSLLTEIALRELLFHFDPDAGHGADALENFAAIAALHPGRSTL EIALPCKSSPAGEAAEIARQMQIAGFKPDAILISPSVDRQSTPPGSKWPDCPPLEEVYAAARAAFPGIRIGGGMLSYFTE LNRKRVPAGEIDFVSHCTNPIVHAADDLSVMQTLEALPFITRSVRAIYDDKPYRIGPSTIPMRQNPYGSRTMDNPFGGRI PMANRDPRHNGRFAEAFALGYAIRVLDAGLECLTLSALTGPFGLIAGPDEPVERGGRRPLFNTVQTLSALAGASWQECLS SSPSEVLSFVARDAAGAKLYVVNLTGEERRVDGGALAEELRLAPFATAALPLAD >Mature_613_residues TADAFQLYGTRVEERPTVRLTAGKLTADLADGNLRTIRYDGVEVLRAISYLVRDRDWGTYSPEIAGLRIEQGKDRFEVSY RARCEGPDETALVIGVRISGDQDRLDFEAEATSRTGFDTNRCGFCILHPIVGVAGSPAAVEHVDGQIEATRFPDLIEPWQ PIKDMRAITHQVMPDVSAECRMEGDTFEMEDQRNWSDASYKTYVRPLALPWPYQIPANQPVRQKTSLIISDTSRSVTPPV AAQSGVTRLEFGARTGTMPGIGVIVTPEEADATLTARSLLTEIALRELLFHFDPDAGHGADALENFAAIAALHPGRSTLE IALPCKSSPAGEAAEIARQMQIAGFKPDAILISPSVDRQSTPPGSKWPDCPPLEEVYAAARAAFPGIRIGGGMLSYFTEL NRKRVPAGEIDFVSHCTNPIVHAADDLSVMQTLEALPFITRSVRAIYDDKPYRIGPSTIPMRQNPYGSRTMDNPFGGRIP MANRDPRHNGRFAEAFALGYAIRVLDAGLECLTLSALTGPFGLIAGPDEPVERGGRRPLFNTVQTLSALAGASWQECLSS SPSEVLSFVARDAAGAKLYVVNLTGEERRVDGGALAEELRLAPFATAALPLAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66693; Mature: 66562
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00527 RIBOSOMAL_S14
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADAFQLYGTRVEERPTVRLTAGKLTADLADGNLRTIRYDGVEVLRAISYLVRDRDWGT CCCCHHHHHCCCCCCCCCEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCC YSPEIAGLRIEQGKDRFEVSYRARCEGPDETALVIGVRISGDQDRLDFEAEATSRTGFDT CCCCEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCC NRCGFCILHPIVGVAGSPAAVEHVDGQIEATRFPDLIEPWQPIKDMRAITHQVMPDVSAE CCCCCEEEHHHHCCCCCCHHHHHCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCHH CRMEGDTFEMEDQRNWSDASYKTYVRPLALPWPYQIPANQPVRQKTSLIISDTSRSVTPP EEECCCCEECCCCCCCCCCCHHHHHCEECCCCCCCCCCCCCCHHHCEEEEECCCCCCCCC VAAQSGVTRLEFGARTGTMPGIGVIVTPEEADATLTARSLLTEIALRELLFHFDPDAGHG CHHHCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC ADALENFAAIAALHPGRSTLEIALPCKSSPAGEAAEIARQMQIAGFKPDAILISPSVDRQ HHHHHHHHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC STPPGSKWPDCPPLEEVYAAARAAFPGIRIGGGMLSYFTELNRKRVPAGEIDFVSHCTNP CCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCCC IVHAADDLSVMQTLEALPFITRSVRAIYDDKPYRIGPSTIPMRQNPYGSRTMDNPFGGRI CEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC PMANRDPRHNGRFAEAFALGYAIRVLDAGLECLTLSALTGPFGLIAGPDEPVERGGRRPL CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHCCCCEEECCCCCHHHCCCCCCH FNTVQTLSALAGASWQECLSSSPSEVLSFVARDAAGAKLYVVNLTGEERRVDGGALAEEL HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH RLAPFATAALPLAD HCCCHHHCCCCCCC >Mature Secondary Structure TADAFQLYGTRVEERPTVRLTAGKLTADLADGNLRTIRYDGVEVLRAISYLVRDRDWGT CCCHHHHHCCCCCCCCCEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCC YSPEIAGLRIEQGKDRFEVSYRARCEGPDETALVIGVRISGDQDRLDFEAEATSRTGFDT CCCCEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCC NRCGFCILHPIVGVAGSPAAVEHVDGQIEATRFPDLIEPWQPIKDMRAITHQVMPDVSAE CCCCCEEEHHHHCCCCCCHHHHHCCCCEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCHH CRMEGDTFEMEDQRNWSDASYKTYVRPLALPWPYQIPANQPVRQKTSLIISDTSRSVTPP EEECCCCEECCCCCCCCCCCHHHHHCEECCCCCCCCCCCCCCHHHCEEEEECCCCCCCCC VAAQSGVTRLEFGARTGTMPGIGVIVTPEEADATLTARSLLTEIALRELLFHFDPDAGHG CHHHCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC ADALENFAAIAALHPGRSTLEIALPCKSSPAGEAAEIARQMQIAGFKPDAILISPSVDRQ HHHHHHHHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC STPPGSKWPDCPPLEEVYAAARAAFPGIRIGGGMLSYFTELNRKRVPAGEIDFVSHCTNP CCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCCC IVHAADDLSVMQTLEALPFITRSVRAIYDDKPYRIGPSTIPMRQNPYGSRTMDNPFGGRI CEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC PMANRDPRHNGRFAEAFALGYAIRVLDAGLECLTLSALTGPFGLIAGPDEPVERGGRRPL CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHCCCCEEECCCCCHHHCCCCCCH FNTVQTLSALAGASWQECLSSSPSEVLSFVARDAAGAKLYVVNLTGEERRVDGGALAEEL HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH RLAPFATAALPLAD HCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA