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The map label for this gene is whiG [H]

Identifier: 85859187

GI number: 85859187

Start: 1364764

End: 1365549

Strand: Direct

Name: whiG [H]

Synonym: SYN_02827

Alternate gene names: 85859187

Gene position: 1364764-1365549 (Clockwise)

Preceding gene: 85859186

Following gene: 85859188

Centisome position: 42.93

GC content: 44.27

Gene sequence:

>786_bases
GTGAAGAAAATCCTGAGTACGATGAAAGCGGGAGCATCAGTTTCTTCGGGGAAAAAATCCTGGGTAATGAATGCAGATAA
GAAAGATCGTGAAGCATTAATCTTGAAATATCTTCCCTTTGTAAAAGCTGTTGTAGGCCGCATGGCATCCAAAATACCCA
TTGATGCCGGGGACAAGGAAGATCTGATTCACGTGGGAATTATCGGCTTGATGTCCGCAATTGAAAAATATGATACCAGG
AGAAACGTCCGCTTTGAAACCTATGCTGGAATCAGAATTCGAGGCGCTGTTCTTGACGAGTTAAGGGCAAGGGATTGGGT
TCCAAGAGCTGTGCGCAGCAGGGATAATGAAATTACGAAGGCTATTTCGTCGTTGCAGAAGATATTGAGAAGAGCGCCGG
ACGATCATGAAATATCGGAATATTTGGGACTGTCTATTGAAGAGTATTTTAAATTGCTGGATGATTCCCGTTGCATTTCA
CTGATCAGCAGCGAAGATTTACCCGGAGATTATCTGGATCGTTATTCCTGTTCCGATGTAATCAGGGCCGTCGAACAGGG
CAGTGCTCTAGATTTAATCACGGACCATGAGTTCAGAATGCAACTGAAGAAAGCCATGGAGCTGCTGCCTGACAAAGAGC
GCCTGGTTTTGACATTATATTATTATGAGGAACTGACGATGAAGGAAATCGGTAAAGTTCTGGATTTAACGGAGTCGAGG
GTATGTCAGCTTCATTCTCAGGCCATTTTCCGCCTCAGGGCGGCGGTAAAGAAAATTAACTTGTAA

Upstream 100 bases:

>100_bases
AAAAAATTACAGGAAGCCGTTAAACTGCGAAAGGCCCTCGTGGAGCTTTATCCTGATTCCAAGGCAAGTCTTTGTGTAAA
GAAGGTGGCTGAAAAAATAT

Downstream 100 bases:

>100_bases
GGCTTTAAGACAAACTGAAAACAGGGTGCCGGGATTGAGAGTCGGGATTAATCAGAATAAGAGATAAGCGAAGTTTTTAC
CACGTGGCCATTCTATTGAC

Product: RNA polymerase flagellar sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKKILSTMKAGASVSSGKKSWVMNADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKEDLIHVGIIGLMSAIEKYDTR
RNVRFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITKAISSLQKILRRAPDDHEISEYLGLSIEEYFKLLDDSRCIS
LISSEDLPGDYLDRYSCSDVIRAVEQGSALDLITDHEFRMQLKKAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESR
VCQLHSQAIFRLRAAVKKINL

Sequences:

>Translated_261_residues
MKKILSTMKAGASVSSGKKSWVMNADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKEDLIHVGIIGLMSAIEKYDTR
RNVRFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITKAISSLQKILRRAPDDHEISEYLGLSIEEYFKLLDDSRCIS
LISSEDLPGDYLDRYSCSDVIRAVEQGSALDLITDHEFRMQLKKAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESR
VCQLHSQAIFRLRAAVKKINL
>Mature_261_residues
MKKILSTMKAGASVSSGKKSWVMNADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKEDLIHVGIIGLMSAIEKYDTR
RNVRFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITKAISSLQKILRRAPDDHEISEYLGLSIEEYFKLLDDSRCIS
LISSEDLPGDYLDRYSCSDVIRAVEQGSALDLITDHEFRMQLKKAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESR
VCQLHSQAIFRLRAAVKKINL

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=231, Percent_Identity=41.991341991342, Blast_Score=177, Evalue=4e-46,
Organism=Escherichia coli, GI1789098, Length=209, Percent_Identity=27.7511961722488, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 29799; Mature: 29799

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILSTMKAGASVSSGKKSWVMNADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKE
CHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DLIHVGIIGLMSAIEKYDTRRNVRFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITK
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEHHHHHHHHHHHCCCHHHHHCCCHHHHH
AISSLQKILRRAPDDHEISEYLGLSIEEYFKLLDDSRCISLISSEDLPGDYLDRYSCSDV
HHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHCCHHHH
IRAVEQGSALDLITDHEFRMQLKKAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESR
HHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
VCQLHSQAIFRLRAAVKKINL
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKILSTMKAGASVSSGKKSWVMNADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKE
CHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DLIHVGIIGLMSAIEKYDTRRNVRFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITK
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEHHHHHHHHHHHCCCHHHHHCCCHHHHH
AISSLQKILRRAPDDHEISEYLGLSIEEYFKLLDDSRCISLISSEDLPGDYLDRYSCSDV
HHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHCCHHHH
IRAVEQGSALDLITDHEFRMQLKKAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESR
HHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
VCQLHSQAIFRLRAAVKKINL
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]