Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

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The map label for this gene is speB2 [H]

Identifier: 85858225

GI number: 85858225

Start: 378267

End: 379340

Strand: Direct

Name: speB2 [H]

Synonym: SYN_01147

Alternate gene names: 85858225

Gene position: 378267-379340 (Clockwise)

Preceding gene: 85858224

Following gene: 85858226

Centisome position: 11.9

GC content: 55.03

Gene sequence:

>1074_bases
GTGGCAAATGCCGGGGCTTCGGTTTGCTGGACTGTTGTCGCCGATGAACTGAATCGAATAAGGGGGATATCCATGAATCG
CAAGAACGTTCCGATGGTCGCGAACAGAAAAGGCTCTTTGCCACGAGTCTATGGAGATACGCCTTCGTTCCTGGGGGTCG
ATGTCGTTGACATCAATCGCCTTGAGAAGGGCAGGGACGTGATCTTCTCCGGGGTGCCCTGGGAAGGAACGGTGACCTGG
GGGTCTTTTTCGGGCTGCGAGCTCGCGCCGCGGGCAATCCGGCACAGCGCGGCGCGATACGGCGGATTTCTGCCGGAATA
CGAGCTGGATTTCTTTGACTATCTGACTGTCGCAGATGCCGGGGATGTGTCCGTTGATCCGAACAGTCCGGAAAAAACGA
TGAACAACATCTATTCTTCCATGGACAGGATTTACGGGAAGGGAAGCATTCCAGTCACGGTAGGCGGCGATCATTCCATT
ACCCCGCCCATTGTGGATGCCCTAGGCAACAACGCGAAGGGCCCTATCGGCATTCTTCATTTCGACGCTCATCTGGACAA
CGCGAAGGTTTTCGGTGAAGATCTGTTCGCCCGCTGCAGTCCCCTGCATCGCATCGCCCAGAATGAAAAAGTGAGAACGG
AAAGCATCGTTCATATCGGCATTCGGGGGCCGAGAAATTCTCCCTCCCAGTTGGAGTATGCCTGGCAGATAGGGGCGAGA
GTCTTCAACATCCGGGAGATCAGAGAAAGAGGCATGACTTCGGTCATCGACGAAGCGCTCAGGATCGCGTCAAACCAGAC
TGAACATGTGTATGTGACAATTTGCAGCGACTGCATTGACGCGTCCTTCAATCCCGGAGGCCCAGCGGATTTCAACGGCC
TGTTTCCTCACGAATTGTTCTCGGCTCTCTACACGATCGGAAGGGCGGGGATATCCGGTTTGGACTACGTGGAAGTCTAT
CCGATTCAGGACCCGAATTCGTTTTCTTCTCACCTGGCTTCCTGGGCGATCATCCATGCCCTCGTGGGGCTGGCCTCGGG
AAAGAAAAAAAAGAGCGAAACGGCAACGGCCTGA

Upstream 100 bases:

>100_bases
AGTCAGCCGCTGTTTTCTTTACCCAGGCAGTCTGCGATTACTGCTCCGGCAGCTGAACCTGTAGGCTCCCGCGAGGGAGT
TTTTCCGTATTCTGTCGGCT

Downstream 100 bases:

>100_bases
CGCGGTCGGTTTCCCAGGGGAGGCGGGTTCTGCGGTTCCGTCCGCCTCAGGACGAGAAGGTTCAAACGACATCTGAAAGT
TGCGTGTTGCAGGGATTATT

Product: arginase

Products: NA

Alternate protein names: Agmatine ureohydrolase 2; AUH 2 [H]

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINRLEKGRDVIFSGVPWEGTVTW
GSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADAGDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSI
TPPIVDALGNNAKGPIGILHFDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR
VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELFSALYTIGRAGISGLDYVEVY
PIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA

Sequences:

>Translated_357_residues
MANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINRLEKGRDVIFSGVPWEGTVTW
GSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADAGDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSI
TPPIVDALGNNAKGPIGILHFDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR
VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELFSALYTIGRAGISGLDYVEVY
PIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA
>Mature_356_residues
ANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINRLEKGRDVIFSGVPWEGTVTWG
SFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADAGDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSIT
PPIVDALGNNAKGPIGILHFDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGARV
FNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELFSALYTIGRAGISGLDYVEVYP
IQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA

Specific function: Catalyzes The Formation Of Putrescine From Agmatine. [C]

COG id: COG0010

COG function: function code E; Arginase/agmatinase/formimionoglutamate hydrolase, arginase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arginase family. Agmatinase subfamily [H]

Homologues:

Organism=Homo sapiens, GI37537722, Length=313, Percent_Identity=29.073482428115, Blast_Score=122, Evalue=7e-28,
Organism=Escherichia coli, GI1789306, Length=263, Percent_Identity=25.4752851711027, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006035
- InterPro:   IPR020855 [H]

Pfam domain/function: PF00491 Arginase [H]

EC number: =3.5.3.11 [H]

Molecular weight: Translated: 38856; Mature: 38725

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00147 ARGINASE_1 ; PS00148 ARGINASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEECCCCCCCCEEEEEHHH
LEKGRDVIFSGVPWEGTVTWGSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADA
HCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECC
GDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSITPPIVDALGNNAKGPIGILH
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEE
FDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELF
HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHH
SALYTIGRAGISGLDYVEVYPIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA
HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ANAGASVCWTVVADELNRIRGISMNRKNVPMVANRKGSLPRVYGDTPSFLGVDVVDINR
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEECCCCCCCCEEEEEHHH
LEKGRDVIFSGVPWEGTVTWGSFSGCELAPRAIRHSAARYGGFLPEYELDFFDYLTVADA
HCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEECC
GDVSVDPNSPEKTMNNIYSSMDRIYGKGSIPVTVGGDHSITPPIVDALGNNAKGPIGILH
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEE
FDAHLDNAKVFGEDLFARCSPLHRIAQNEKVRTESIVHIGIRGPRNSPSQLEYAWQIGAR
EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
VFNIREIRERGMTSVIDEALRIASNQTEHVYVTICSDCIDASFNPGGPADFNGLFPHELF
HHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHH
SALYTIGRAGISGLDYVEVYPIQDPNSFSSHLASWAIIHALVGLASGKKKKSETATA
HHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]