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The map label for this gene is ycdT [C]

Identifier: 85375067

GI number: 85375067

Start: 2262490

End: 2263449

Strand: Direct

Name: ycdT [C]

Synonym: ELI_11200

Alternate gene names: 85375067

Gene position: 2262490-2263449 (Clockwise)

Preceding gene: 85375066

Following gene: 85375085

Centisome position: 74.12

GC content: 65.1

Gene sequence:

>960_bases
ATGGGGCTGCGGTTTTCAGCAGGGGACCTTGCGCAATTTCTTGATCTTTCTTCGGGCTTAAGATCGGATATCCTTCTCAA
ACTCGACGCGGAAGGCTTCATACTTTCGTCGTCGCGGGCACTCGAGACCTTCGGATCGCAGGGCTCGGACGGCCATTCGC
GCCTCCTTATCGCGCCGCGCCTCTCCGATCTGGTCGTAGAGGGCCACACGAGAGCTGTCGGATCCGAACTAGCGTTAGCC
GCAGCGGGTAACGCGGACAGGGGTTGGATCGAGGTCCGCCTGACCTGTGGGGGCGAGTCGTGGCGCTGGTTTTCGCTCCG
CCTGGTTCCGGCACGAAACAAAGCCGGCGCAGCGAGCGTGCTGGCGGTACTCAGGGATATTCACGAGCGCCGGACGCTCG
AAGACAAGCTCTTCGCCGCCCGTATGACCGACCCTCTCACCGGCTTGACCAATCGCGTCGCTTTCGATTCGATGCTCGAC
CATGTGAGTGGGAGCGGGCCCGGCGGATGCCTCGCGCTGTTCGGGGTCGATCACCTGCGCGCAATCAACCACCGGCTGGG
ACACAATGTCGGCGATCAGGTGCTGTGCGGCTTCGCGGAAGTTCTGCGCACCGTGATGCGCACCGGCGACACGATCTCGC
GGATCGGCGATGCGACATTCGCAGTACTGCTCCTCGATACGGACGACCGCGAAGCGAGCGCACTAACGCGGCAAGCACAG
GACGTGTTCGCCGGCGACCTGCCGGCGGGCAAATCGCGCCTCACGCTGTCGGCCACTGTCGGGATCGCGGAGATCGGCAC
CGGGCCGGAAGACACCCTGCGCCGCGCCGAAATGGCGATGTTTCTCGGCAAGGCGGGAAGCAGCACCCGTCCGGTTCTCG
AACGCGACAGCCGCCCGCGGCGCGCTGTCGCGAGCCGAGCGGCTTCGACCGGATTTCCGCAACTGCGCCGCGCGGGCTGA

Upstream 100 bases:

>100_bases
CGATTCTAAATTTAGGGGATTTAGTTAAGTCGACTAACAGGTAAGATAATAAATATATCCGAATTCTATATTTGGATATC
GTAAATATGGGGCAAAATGG

Downstream 100 bases:

>100_bases
TCCTTACTCCCAGAAGTAGGGCTTGCGGGTGCTGGTGCCCGTCGCGACCTCGTTCATGGTCGTGGCATCGTAGAGCCGCC
CGCCGAGCATGACCTGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MGLRFSAGDLAQFLDLSSGLRSDILLKLDAEGFILSSSRALETFGSQGSDGHSRLLIAPRLSDLVVEGHTRAVGSELALA
AAGNADRGWIEVRLTCGGESWRWFSLRLVPARNKAGAASVLAVLRDIHERRTLEDKLFAARMTDPLTGLTNRVAFDSMLD
HVSGSGPGGCLALFGVDHLRAINHRLGHNVGDQVLCGFAEVLRTVMRTGDTISRIGDATFAVLLLDTDDREASALTRQAQ
DVFAGDLPAGKSRLTLSATVGIAEIGTGPEDTLRRAEMAMFLGKAGSSTRPVLERDSRPRRAVASRAASTGFPQLRRAG

Sequences:

>Translated_319_residues
MGLRFSAGDLAQFLDLSSGLRSDILLKLDAEGFILSSSRALETFGSQGSDGHSRLLIAPRLSDLVVEGHTRAVGSELALA
AAGNADRGWIEVRLTCGGESWRWFSLRLVPARNKAGAASVLAVLRDIHERRTLEDKLFAARMTDPLTGLTNRVAFDSMLD
HVSGSGPGGCLALFGVDHLRAINHRLGHNVGDQVLCGFAEVLRTVMRTGDTISRIGDATFAVLLLDTDDREASALTRQAQ
DVFAGDLPAGKSRLTLSATVGIAEIGTGPEDTLRRAEMAMFLGKAGSSTRPVLERDSRPRRAVASRAASTGFPQLRRAG
>Mature_318_residues
GLRFSAGDLAQFLDLSSGLRSDILLKLDAEGFILSSSRALETFGSQGSDGHSRLLIAPRLSDLVVEGHTRAVGSELALAA
AGNADRGWIEVRLTCGGESWRWFSLRLVPARNKAGAASVLAVLRDIHERRTLEDKLFAARMTDPLTGLTNRVAFDSMLDH
VSGSGPGGCLALFGVDHLRAINHRLGHNVGDQVLCGFAEVLRTVMRTGDTISRIGDATFAVLLLDTDDREASALTRQAQD
VFAGDLPAGKSRLTLSATVGIAEIGTGPEDTLRRAEMAMFLGKAGSSTRPVLERDSRPRRAVASRAASTGFPQLRRAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=31.0126582278481, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=30.0546448087432, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=30.9090909090909, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=27.4853801169591, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 34031; Mature: 33900

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRFSAGDLAQFLDLSSGLRSDILLKLDAEGFILSSSRALETFGSQGSDGHSRLLIAPR
CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCHHHHHHCCCCCCCCCEEEEECC
LSDLVVEGHTRAVGSELALAAAGNADRGWIEVRLTCGGESWRWFSLRLVPARNKAGAASV
HHHHHCCCCCHHHCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHH
LAVLRDIHERRTLEDKLFAARMTDPLTGLTNRVAFDSMLDHVSGSGPGGCLALFGVDHLR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH
AINHRLGHNVGDQVLCGFAEVLRTVMRTGDTISRIGDATFAVLLLDTDDREASALTRQAQ
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHH
DVFAGDLPAGKSRLTLSATVGIAEIGTGPEDTLRRAEMAMFLGKAGSSTRPVLERDSRPR
HHHCCCCCCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHH
RAVASRAASTGFPQLRRAG
HHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure 
GLRFSAGDLAQFLDLSSGLRSDILLKLDAEGFILSSSRALETFGSQGSDGHSRLLIAPR
CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCHHHHHHCCCCCCCCCEEEEECC
LSDLVVEGHTRAVGSELALAAAGNADRGWIEVRLTCGGESWRWFSLRLVPARNKAGAASV
HHHHHCCCCCHHHCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHH
LAVLRDIHERRTLEDKLFAARMTDPLTGLTNRVAFDSMLDHVSGSGPGGCLALFGVDHLR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH
AINHRLGHNVGDQVLCGFAEVLRTVMRTGDTISRIGDATFAVLLLDTDDREASALTRQAQ
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHH
DVFAGDLPAGKSRLTLSATVGIAEIGTGPEDTLRRAEMAMFLGKAGSSTRPVLERDSRPR
HHHCCCCCCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHH
RAVASRAASTGFPQLRRAG
HHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]