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The map label for this gene is yafC [H]

Identifier: 84622025

GI number: 84622025

Start: 399119

End: 400033

Strand: Direct

Name: yafC [H]

Synonym: XOO_0368

Alternate gene names: 84622025

Gene position: 399119-400033 (Clockwise)

Preceding gene: 84622022

Following gene: 84622027

Centisome position: 8.08

GC content: 68.31

Gene sequence:

>915_bases
ATGGCGGACACGATCAGCTGGGAGCGCTACCGGTCCTTCCTCGCGGTGCTGGAAGAGGGCTCGCTGTCGGCCGCGTCGCG
CGCGCTGGGTCTGACCCAGCCCACGGTCGGGCGGCATGTCGCGGCGTTGGAGGAACTGCTGGCAGTGCCGCTGTTTGTGC
GTTCGCAAACCGGACTGATCCCCACCGATGCCGCACAGGCGTTGCGCGGTCATGCGCGGGCGATGGCCGACATTGCCGCG
GCATTGCAGCGCGCAGCTGGCCGGCACGGCGACGCGCTGCAAGGCACGGTCAGAATCTCCGCCAGCGAGGTGGTGGGCGC
TGGAATCCTGCCGCCGATCCTGGCTACGCTGCGTCACGTGCAACCGCAGCTGCGCACGGCACTGGTGTTGAGCAATCGGG
TGCAGGATCTGCTGCAGCGCCAAGCCGATGTGGCGGTGCGTATGATCCGGCCGCAACAGGACCTGCTGGTGGCGCGTTGC
GTCGGTGAGATCGCATTCGGGCTATACGCCCATCCGGACGATGTAGACCGGCATGGCGTGCCACAGCGCCCGGACGAGCT
GACGCAACACGCGCTGGTGGGCTTCGACACGGACACGCCGTTTCTGCGCGGCGCGTGTAAGGGTTTCCCATTTTGGGAAC
ACGCGGCCTTCGCGCTACGTGCCGACAGCGATCTGGCCCAGTTGGCGCTGATCCGCGCCGGATGCGGCATCGGCGTCTGC
CAGGCGGCGCTGCCGCAGCGGACGCCACGCCTGCTGCCGGTGGTGCCGCAGCAGGTGGGCGTTGTCCTGGACGTCTGGGT
CACGATGCATCAGGACCTGCGCGCCAGTGCTGCCTGCAGTGCGGTGTTCGCGGCCTGGGCGACTGGATTGTCGGCGCATT
GCGCCACCCCGGAGATTGGCACCGGCATCAACTGA

Upstream 100 bases:

>100_bases
TGTGTCATGGGTCTGCTCCGCTGTCCAGATGCGGCCCGTGTGGAAGGGCTGGTGCCACGAATAAATTGCCGAAGATGCGC
GTGCGGCTATGCATTTATGT

Downstream 100 bases:

>100_bases
CGGCGGCTGGGCGCATGCGCCTGCATGGCACCCAGCCGCTGCGATGACCGATCCGGCGTGCCGCTTACGCGCGAGGTCTG
CATGCGTGACGCATGTGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MADTISWERYRSFLAVLEEGSLSAASRALGLTQPTVGRHVAALEELLAVPLFVRSQTGLIPTDAAQALRGHARAMADIAA
ALQRAAGRHGDALQGTVRISASEVVGAGILPPILATLRHVQPQLRTALVLSNRVQDLLQRQADVAVRMIRPQQDLLVARC
VGEIAFGLYAHPDDVDRHGVPQRPDELTQHALVGFDTDTPFLRGACKGFPFWEHAAFALRADSDLAQLALIRAGCGIGVC
QAALPQRTPRLLPVVPQQVGVVLDVWVTMHQDLRASAACSAVFAAWATGLSAHCATPEIGTGIN

Sequences:

>Translated_304_residues
MADTISWERYRSFLAVLEEGSLSAASRALGLTQPTVGRHVAALEELLAVPLFVRSQTGLIPTDAAQALRGHARAMADIAA
ALQRAAGRHGDALQGTVRISASEVVGAGILPPILATLRHVQPQLRTALVLSNRVQDLLQRQADVAVRMIRPQQDLLVARC
VGEIAFGLYAHPDDVDRHGVPQRPDELTQHALVGFDTDTPFLRGACKGFPFWEHAAFALRADSDLAQLALIRAGCGIGVC
QAALPQRTPRLLPVVPQQVGVVLDVWVTMHQDLRASAACSAVFAAWATGLSAHCATPEIGTGIN
>Mature_303_residues
ADTISWERYRSFLAVLEEGSLSAASRALGLTQPTVGRHVAALEELLAVPLFVRSQTGLIPTDAAQALRGHARAMADIAAA
LQRAAGRHGDALQGTVRISASEVVGAGILPPILATLRHVQPQLRTALVLSNRVQDLLQRQADVAVRMIRPQQDLLVARCV
GEIAFGLYAHPDDVDRHGVPQRPDELTQHALVGFDTDTPFLRGACKGFPFWEHAAFALRADSDLAQLALIRAGCGIGVCQ
AALPQRTPRLLPVVPQQVGVVLDVWVTMHQDLRASAACSAVFAAWATGLSAHCATPEIGTGIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=183, Percent_Identity=30.0546448087432, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=25.3472222222222, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=24.2937853107345, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082132, Length=177, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=196, Percent_Identity=25.5102040816327, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788297, Length=149, Percent_Identity=32.2147651006711, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787128, Length=238, Percent_Identity=24.3697478991597, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789440, Length=178, Percent_Identity=26.9662921348315, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=32.6086956521739, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32418; Mature: 32286

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTISWERYRSFLAVLEEGSLSAASRALGLTQPTVGRHVAALEELLAVPLFVRSQTGLI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PTDAAQALRGHARAMADIAAALQRAAGRHGDALQGTVRISASEVVGAGILPPILATLRHV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHH
QPQLRTALVLSNRVQDLLQRQADVAVRMIRPQQDLLVARCVGEIAFGLYAHPDDVDRHGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PQRPDELTQHALVGFDTDTPFLRGACKGFPFWEHAAFALRADSDLAQLALIRAGCGIGVC
CCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHEEECCCHHHHHHHHHHCCCHHHH
QAALPQRTPRLLPVVPQQVGVVLDVWVTMHQDLRASAACSAVFAAWATGLSAHCATPEIG
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TGIN
CCCC
>Mature Secondary Structure 
ADTISWERYRSFLAVLEEGSLSAASRALGLTQPTVGRHVAALEELLAVPLFVRSQTGLI
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PTDAAQALRGHARAMADIAAALQRAAGRHGDALQGTVRISASEVVGAGILPPILATLRHV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHH
QPQLRTALVLSNRVQDLLQRQADVAVRMIRPQQDLLVARCVGEIAFGLYAHPDDVDRHGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PQRPDELTQHALVGFDTDTPFLRGACKGFPFWEHAAFALRADSDLAQLALIRAGCGIGVC
CCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHEEECCCHHHHHHHHHHCCCHHHH
QAALPQRTPRLLPVVPQQVGVVLDVWVTMHQDLRASAACSAVFAAWATGLSAHCATPEIG
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TGIN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]