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The map label for this gene is ycdB [H]

Identifier: 83593931

GI number: 83593931

Start: 3020694

End: 3022037

Strand: Direct

Name: ycdB [H]

Synonym: Rru_A2599

Alternate gene names: 83593931

Gene position: 3020694-3022037 (Clockwise)

Preceding gene: 83593930

Following gene: 83593932

Centisome position: 69.4

GC content: 66.22

Gene sequence:

>1344_bases
ATGTCTAAGCCTGTCGATCCCGGTCTGTTCCCCGCCCCGGCCCTCCCCCTCGGCCGTCGCCATCTCCTCACCGGTTTTGG
CCTCACCGCGCTCGGCGGATCGCTCGCCGGCCTCGCCGCCAGCGCCCGGGCCGACGATCGGCAGACCCAAAGCGCCCCTC
ACGCCACCGACGCGCCGGTCGACGGCGTCGCCTCGCCCAACGACACCGTGGCCTATCTCGGTGTCCATCAGGCCGGCATC
GTCACTCCGCGACCGGCCAATGGCATGGTGGCGAGCTTCGCCGTGCTCGCCGATACCCCCGACGCCCTGGAAACCCTGTT
CAAAACGCTGACGGCGCGCATCGCCTTCCTCACCGTCGGCGGCGCGGTGCCCCAACTTGATCCCAAGCTGCCCCCCGCCG
ACTCGGGATTGCTGGGACCGGTCATCCGGCCCGACGCCCTGACGATCACCCTCTCGGTGGGCGCCTCGCTGTTTGACGAG
CGGCCGTGGCTCGCCCCGCATAAACCCAGGCATCTGTCGCGGATGACGCGTTTTCCCAATGACGCGCTCGACGCCGACCT
CTGCCACGGCGATCTTTCCATCCAGATCTGCGCCAATACCCAGGACACGACGATCCATGCCCTGCGCGACCTGATCAAGG
CGACCTCGCGCCAGTTAGTACTGCGCTGGAAGCAGGAGGGCACCGTGCCGGTGATCGCCCCCCGGCCGGACGACCGGCCC
GAAAGCGCGCGCAACTTCCTGGGCTTCCGCGACGGTTCGGCCAATCCCGATTCCTCGGACGCGCCGACGATGGACCGTGT
CGTCTGGGTGGGGCGGCAAGACGGCGAGCCGGCCTGGGCCGTGGGCGGCAGTTATCAGGCGGTCCGCCTCATCCGCAATT
TCGTCGAACGCTGGGACCGTACGCCCTTTGGCGAACAAGAACGCATCTTCGGCCGGACCAAGATCACCGGCGCGCCGCTC
GACAAGCCCGACGGCCACGAGACCGACGGTCCCGATTACGCCGCCGATCGGGATGGCCGAAAGACGCCCCTTGACTCTCA
CATCCGCCTTGCCAATGCCCGCGATGCCGCGGCCCAGGAAAACCTTATTTTGCGGCGGCCGTTCAACTACTCAAACGGCG
TGACCAAGTCCGGACAGCTCGACCAGGGGCTTTTGTTCATCGCCTATCAGGCCAATCTCGATCGTGGATTTATCGCGGTC
CAGAACAAGCTCAACAACGAACCGCTTGAAGAATACATCAAGCCGATCGGTGGCGGGTATTTCTACACCCTTCCCGGCAT
CATTGAGGCTTCCGACTATGTCGGCAGCACGCTTGTCGCCGCCGCGCGCGGCGTTTCGCCGTAA

Upstream 100 bases:

>100_bases
TCCGTCGCGGCCGGGGAGCGCAAGGCGTTGGCCGCCTCCTTCACCGCCCTTGCCGAAGCGATCGCCAAGGTCAATCCGAC
CCTTGGCCTGGAGTAAGACG

Downstream 100 bases:

>100_bases
AGAGCGGTCACCGAGCGATCTGCAACGGATCGCCACAACTATTTTCTTCGATATCAAAAGCTTGAGAGCGGCGCGCTGGA
AGCAGATCTCCCGCACGCCG

Product: Tat-translocated enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSKPVDPGLFPAPALPLGRRHLLTGFGLTALGGSLAGLAASARADDRQTQSAPHATDAPVDGVASPNDTVAYLGVHQAGI
VTPRPANGMVASFAVLADTPDALETLFKTLTARIAFLTVGGAVPQLDPKLPPADSGLLGPVIRPDALTITLSVGASLFDE
RPWLAPHKPRHLSRMTRFPNDALDADLCHGDLSIQICANTQDTTIHALRDLIKATSRQLVLRWKQEGTVPVIAPRPDDRP
ESARNFLGFRDGSANPDSSDAPTMDRVVWVGRQDGEPAWAVGGSYQAVRLIRNFVERWDRTPFGEQERIFGRTKITGAPL
DKPDGHETDGPDYAADRDGRKTPLDSHIRLANARDAAAQENLILRRPFNYSNGVTKSGQLDQGLLFIAYQANLDRGFIAV
QNKLNNEPLEEYIKPIGGGYFYTLPGIIEASDYVGSTLVAAARGVSP

Sequences:

>Translated_447_residues
MSKPVDPGLFPAPALPLGRRHLLTGFGLTALGGSLAGLAASARADDRQTQSAPHATDAPVDGVASPNDTVAYLGVHQAGI
VTPRPANGMVASFAVLADTPDALETLFKTLTARIAFLTVGGAVPQLDPKLPPADSGLLGPVIRPDALTITLSVGASLFDE
RPWLAPHKPRHLSRMTRFPNDALDADLCHGDLSIQICANTQDTTIHALRDLIKATSRQLVLRWKQEGTVPVIAPRPDDRP
ESARNFLGFRDGSANPDSSDAPTMDRVVWVGRQDGEPAWAVGGSYQAVRLIRNFVERWDRTPFGEQERIFGRTKITGAPL
DKPDGHETDGPDYAADRDGRKTPLDSHIRLANARDAAAQENLILRRPFNYSNGVTKSGQLDQGLLFIAYQANLDRGFIAV
QNKLNNEPLEEYIKPIGGGYFYTLPGIIEASDYVGSTLVAAARGVSP
>Mature_446_residues
SKPVDPGLFPAPALPLGRRHLLTGFGLTALGGSLAGLAASARADDRQTQSAPHATDAPVDGVASPNDTVAYLGVHQAGIV
TPRPANGMVASFAVLADTPDALETLFKTLTARIAFLTVGGAVPQLDPKLPPADSGLLGPVIRPDALTITLSVGASLFDER
PWLAPHKPRHLSRMTRFPNDALDADLCHGDLSIQICANTQDTTIHALRDLIKATSRQLVLRWKQEGTVPVIAPRPDDRPE
SARNFLGFRDGSANPDSSDAPTMDRVVWVGRQDGEPAWAVGGSYQAVRLIRNFVERWDRTPFGEQERIFGRTKITGAPLD
KPDGHETDGPDYAADRDGRKTPLDSHIRLANARDAAAQENLILRRPFNYSNGVTKSGQLDQGLLFIAYQANLDRGFIAVQ
NKLNNEPLEEYIKPIGGGYFYTLPGIIEASDYVGSTLVAAARGVSP

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=425, Percent_Identity=56.2352941176471, Blast_Score=448, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 48034; Mature: 47902

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPVDPGLFPAPALPLGRRHLLTGFGLTALGGSLAGLAASARADDRQTQSAPHATDAPV
CCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCHHHHHHHHCCCCCHHHCCCCCCCCCCC
DGVASPNDTVAYLGVHQAGIVTPRPANGMVASFAVLADTPDALETLFKTLTARIAFLTVG
CCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEC
GAVPQLDPKLPPADSGLLGPVIRPDALTITLSVGASLFDERPWLAPHKPRHLSRMTRFPN
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCCHHHHHHHHCCC
DALDADLCHGDLSIQICANTQDTTIHALRDLIKATSRQLVLRWKQEGTVPVIAPRPDDRP
CCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCH
ESARNFLGFRDGSANPDSSDAPTMDRVVWVGRQDGEPAWAVGGSYQAVRLIRNFVERWDR
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHCC
TPFGEQERIFGRTKITGAPLDKPDGHETDGPDYAADRDGRKTPLDSHIRLANARDAAAQE
CCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCHHHHHHC
NLILRRPFNYSNGVTKSGQLDQGLLFIAYQANLDRGFIAVQNKLNNEPLEEYIKPIGGGY
CEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEHHHCCCCHHHHHHHHCCCCE
FYTLPGIIEASDYVGSTLVAAARGVSP
EEECCCEEECHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKPVDPGLFPAPALPLGRRHLLTGFGLTALGGSLAGLAASARADDRQTQSAPHATDAPV
CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCHHHHHHHHCCCCCHHHCCCCCCCCCCC
DGVASPNDTVAYLGVHQAGIVTPRPANGMVASFAVLADTPDALETLFKTLTARIAFLTVG
CCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEC
GAVPQLDPKLPPADSGLLGPVIRPDALTITLSVGASLFDERPWLAPHKPRHLSRMTRFPN
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCCHHHHHHHHCCC
DALDADLCHGDLSIQICANTQDTTIHALRDLIKATSRQLVLRWKQEGTVPVIAPRPDDRP
CCCCHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCCH
ESARNFLGFRDGSANPDSSDAPTMDRVVWVGRQDGEPAWAVGGSYQAVRLIRNFVERWDR
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHCC
TPFGEQERIFGRTKITGAPLDKPDGHETDGPDYAADRDGRKTPLDSHIRLANARDAAAQE
CCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCHHHHHHC
NLILRRPFNYSNGVTKSGQLDQGLLFIAYQANLDRGFIAVQNKLNNEPLEEYIKPIGGGY
CEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEHHHCCCCHHHHHHHHCCCCE
FYTLPGIIEASDYVGSTLVAAARGVSP
EEECCCEEECHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]