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The map label for this gene is ycdO [H]

Identifier: 83593930

GI number: 83593930

Start: 3019502

End: 3020689

Strand: Direct

Name: ycdO [H]

Synonym: Rru_A2598

Alternate gene names: 83593930

Gene position: 3019502-3020689 (Clockwise)

Preceding gene: 83593929

Following gene: 83593931

Centisome position: 69.37

GC content: 68.1

Gene sequence:

>1188_bases
ATGTCCTCGCCCCAACAGCACGGCGACGGCGGGCCGCCGCCCCGGCTGATGATCTATGCCGTCATCGCCGCCGGAGCGCT
CGCCGTGGCCGGTGGCGTCGCCTTCTATTACGCCTCGCAGACCGCCAAGCGGCCGACCGAGGCGGGAGCGATCGCCGTCA
GCGTCGGTGACAAGGCCTGCACGCCGATGGATATAACGGTCCCGGCGGGGCGCTCGGTCTTCATGATCACCAACGCGTCG
AACCGGCCGATCGAATGGGAGATCCTTGACGGCGTCATGGTGGTCGAGGAACGCGAGAACATCGCCCCCGGCTTCAAGTC
GCAGCTCGCCGCCCGCCTCAAACCGGGCGTCTACGACATAACCTGCGGTTTGTTGTCCAACCCGCGCGGCACCCTGACGG
TGACCGCCTCGGCCCATTCCGAGGCCGAGAAGGCGAAGCCGCCGCTCAAGGCTTTCATCGGTCCGCTTTCCGAATACAAG
GTTTACCTCAGCCTTCAATCGGCCGCCCTGGTCACCCGGACCGAAGCCCTGGCCGCGGCCATCGGCGCGGGCGACCTGGA
TACGGCCAAAGGCGCCTATGCCGAGGCGCGGCTGGCCTATCGGCATATCGAAACGGTAAGCGGCCGCATCGCCGATCTGG
AAAACGCCATCGATCCGCTGGCCGCCTATTTGGCCGGCCAGGAAAACGATCCGGGCTTTATCGGCTTCCACCGCATCGAA
CAGGGCCTATGGACCGCCCGCTCCACCGAGGGGTTGAAGCCGGTCGCCGACGCCCTCGCCACCGCCGTCCTGGCCCTCAA
AGACCGGCTTCGCGGCCTCAAGCTCGAACCGAGCGACCTTGCCGACGGAGCGGTCCGCGAGGCGCGACGGCTGGCCGAAG
GGCCCGTGCCCTCTGGCGACAGCCTTTATGCCGGCGATGATCTGGTCGAATTCGCCGCCGCCGTCGACGGCCTGGAAAAG
CCGGTTTCCCTGTTGATGCCCCTGGTCGGGGAAGCCTCGCCCGAGACGGCCGAAGCGATCACCCGGGCCTTCGCCGACAC
CCGGGCGGCGATCGCCCGCCTCGCCGGTCCCAGCGCGCCCCCCTCTTATCCTTCCGTCGCGGCCGGGGAGCGCAAGGCGT
TGGCCGCCTCCTTCACCGCCCTTGCCGAAGCGATCGCCAAGGTCAATCCGACCCTTGGCCTGGAGTAA

Upstream 100 bases:

>100_bases
TCTATGGCCTCTTTCTCCTGACCACGCTGATCGTGTTCCTCAAGCCCCCTCGGCCGGCGCCCCTGCGCCGCGCCGCGCCC
GACTCGTTGAAAGGATGACG

Downstream 100 bases:

>100_bases
GACGATGTCTAAGCCTGTCGATCCCGGTCTGTTCCCCGCCCCGGCCCTCCCCCTCGGCCGTCGCCATCTCCTCACCGGTT
TTGGCCTCACCGCGCTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MSSPQQHGDGGPPPRLMIYAVIAAGALAVAGGVAFYYASQTAKRPTEAGAIAVSVGDKACTPMDITVPAGRSVFMITNAS
NRPIEWEILDGVMVVEERENIAPGFKSQLAARLKPGVYDITCGLLSNPRGTLTVTASAHSEAEKAKPPLKAFIGPLSEYK
VYLSLQSAALVTRTEALAAAIGAGDLDTAKGAYAEARLAYRHIETVSGRIADLENAIDPLAAYLAGQENDPGFIGFHRIE
QGLWTARSTEGLKPVADALATAVLALKDRLRGLKLEPSDLADGAVREARRLAEGPVPSGDSLYAGDDLVEFAAAVDGLEK
PVSLLMPLVGEASPETAEAITRAFADTRAAIARLAGPSAPPSYPSVAAGERKALAASFTALAEAIAKVNPTLGLE

Sequences:

>Translated_395_residues
MSSPQQHGDGGPPPRLMIYAVIAAGALAVAGGVAFYYASQTAKRPTEAGAIAVSVGDKACTPMDITVPAGRSVFMITNAS
NRPIEWEILDGVMVVEERENIAPGFKSQLAARLKPGVYDITCGLLSNPRGTLTVTASAHSEAEKAKPPLKAFIGPLSEYK
VYLSLQSAALVTRTEALAAAIGAGDLDTAKGAYAEARLAYRHIETVSGRIADLENAIDPLAAYLAGQENDPGFIGFHRIE
QGLWTARSTEGLKPVADALATAVLALKDRLRGLKLEPSDLADGAVREARRLAEGPVPSGDSLYAGDDLVEFAAAVDGLEK
PVSLLMPLVGEASPETAEAITRAFADTRAAIARLAGPSAPPSYPSVAAGERKALAASFTALAEAIAKVNPTLGLE
>Mature_394_residues
SSPQQHGDGGPPPRLMIYAVIAAGALAVAGGVAFYYASQTAKRPTEAGAIAVSVGDKACTPMDITVPAGRSVFMITNASN
RPIEWEILDGVMVVEERENIAPGFKSQLAARLKPGVYDITCGLLSNPRGTLTVTASAHSEAEKAKPPLKAFIGPLSEYKV
YLSLQSAALVTRTEALAAAIGAGDLDTAKGAYAEARLAYRHIETVSGRIADLENAIDPLAAYLAGQENDPGFIGFHRIEQ
GLWTARSTEGLKPVADALATAVLALKDRLRGLKLEPSDLADGAVREARRLAEGPVPSGDSLYAGDDLVEFAAAVDGLEKP
VSLLMPLVGEASPETAEAITRAFADTRAAIARLAGPSAPPSYPSVAAGERKALAASFTALAEAIAKVNPTLGLE

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=345, Percent_Identity=38.8405797101449, Blast_Score=249, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 40995; Mature: 40864

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPQQHGDGGPPPRLMIYAVIAAGALAVAGGVAFYYASQTAKRPTEAGAIAVSVGDKAC
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECHHHCCCCCCCEEEEECCCCCC
TPMDITVPAGRSVFMITNASNRPIEWEILDGVMVVEERENIAPGFKSQLAARLKPGVYDI
CCEEEEECCCCEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHCCCCEEE
TCGLLSNPRGTLTVTASAHSEAEKAKPPLKAFIGPLSEYKVYLSLQSAALVTRTEALAAA
EEHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHCCHHHEEEEEEEHHHHHHHHHHHHHHH
IGAGDLDTAKGAYAEARLAYRHIETVSGRIADLENAIDPLAAYLAGQENDPGFIGFHRIE
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH
QGLWTARSTEGLKPVADALATAVLALKDRLRGLKLEPSDLADGAVREARRLAEGPVPSGD
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
SLYAGDDLVEFAAAVDGLEKPVSLLMPLVGEASPETAEAITRAFADTRAAIARLAGPSAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PSYPSVAAGERKALAASFTALAEAIAKVNPTLGLE
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SSPQQHGDGGPPPRLMIYAVIAAGALAVAGGVAFYYASQTAKRPTEAGAIAVSVGDKAC
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECHHHCCCCCCCEEEEECCCCCC
TPMDITVPAGRSVFMITNASNRPIEWEILDGVMVVEERENIAPGFKSQLAARLKPGVYDI
CCEEEEECCCCEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHCCCCEEE
TCGLLSNPRGTLTVTASAHSEAEKAKPPLKAFIGPLSEYKVYLSLQSAALVTRTEALAAA
EEHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHCCHHHEEEEEEEHHHHHHHHHHHHHHH
IGAGDLDTAKGAYAEARLAYRHIETVSGRIADLENAIDPLAAYLAGQENDPGFIGFHRIE
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH
QGLWTARSTEGLKPVADALATAVLALKDRLRGLKLEPSDLADGAVREARRLAEGPVPSGD
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
SLYAGDDLVEFAAAVDGLEKPVSLLMPLVGEASPETAEAITRAFADTRAAIARLAGPSAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PSYPSVAAGERKALAASFTALAEAIAKVNPTLGLE
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA