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The map label for this gene is dppB [H]

Identifier: 83593692

GI number: 83593692

Start: 2744061

End: 2745071

Strand: Direct

Name: dppB [H]

Synonym: Rru_A2357

Alternate gene names: 83593692

Gene position: 2744061-2745071 (Clockwise)

Preceding gene: 83593691

Following gene: 83593693

Centisome position: 63.04

GC content: 63.6

Gene sequence:

>1011_bases
ATGATTTCGTTCATTCTCAGACGGGTCGTGCTGATCATCCCGGCCTTCATCGGGGTGACCTTGCTGGCCTTCGCCTTGAT
CCACCTGATCCCCGGCGACCCCATTTTGGTCATGGCCGGCGAACGCGGGGTAAGCCCCGCGCGCCATGCCATGCTGATGA
CCCAACTCGGCCTCGACCGGCCGTTGTGGGAGCAGTATCTGACCTATCTGGGGAAGGCGCTGCAGGGCGACCTTGGTAAC
TCCATCGTCACCCGCCAGCCGGTCATCGAAGAATTCAAGACGCTGTTCCCGGCGACCATCGAGCTTGGCGTCTTCGCCAT
GGTCTTCGCCGTGCTGATCGGCATCCCGGCGGGCATGTTGGCGGCGGTCAAACGCGGCACCAGCCTCGATCACGGGGTGA
TGGTCGTCAGCCTGACGGGCTATTCCATGCCGATTTTCTGGTGGGGCCTGCTGCTGATTATGCTGGTTTCGGGCATCCTC
GGCTGGACGCCGGTCTCCGGGCGCATCGATTCCATCATGTGGATCGACACCGTCACCGGCTTCATGCTGATCGACAGCCT
GCTGTCGGACGAACCCGGCGCCTTCCTGTCGGCTGTTCACCATCTGATCTTGCCCGCCATCGTCGTCGGCACCATCCCCT
TGGCGGTGATCGCCCGCATGACGCGGTCGGCCATGCTCGAGGTCCTGCGCGAGGATTATGTCCGCACCGCGCGGGCCAAG
GGGGTCAGCCCCGGCCGGGTGGTGATGGTCCACGCCCTGCGCAACGCCCTGATCCCGGTGATCACCGTCATCGGCCTGCA
GACGGGCGTTCTGCTGGCCGGCGCCATCCTGACCGAGACGATCTTCGCTTGGCCCGGGGTTGGCAAATGGCTGGTCGACA
GCATCAACCGCCGTGATTATCCGGCGGTTCAGGGCGGCATCTTGCTGATCTCCACCGTGGTCATTCTGGTCAACCTGCTG
GTCGATGTGCTGTATGGCGTCATCAACCCGCGCATCCGCCATCGACGGTAA

Upstream 100 bases:

>100_bases
CTGCGGTAGCCGACGGATTCCAAGGTTTGCATTTCCCATACGGACGTGTATTGTCCGGCGCTTTCCTGGCCCCGCAACAG
CGCGAAGAGCGCGAGACACC

Downstream 100 bases:

>100_bases
TCAAGATGACTCTCACCCCTTCCGAACCCAAGACCGGCCCCAAGACGGCGGGGGGCGCGCTCGACGCTCCCGGCCAGGAG
GCCGCCGTCGCCCTGCGGGC

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDRPLWEQYLTYLGKALQGDLGN
SIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGMLAAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGIL
GWTPVSGRIDSIMWIDTVTGFMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARAK
GVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRDYPAVQGGILLISTVVILVNLL
VDVLYGVINPRIRHRR

Sequences:

>Translated_336_residues
MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDRPLWEQYLTYLGKALQGDLGN
SIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGMLAAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGIL
GWTPVSGRIDSIMWIDTVTGFMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARAK
GVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRDYPAVQGGILLISTVVILVNLL
VDVLYGVINPRIRHRR
>Mature_336_residues
MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDRPLWEQYLTYLGKALQGDLGN
SIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGMLAAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGIL
GWTPVSGRIDSIMWIDTVTGFMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARAK
GVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRDYPAVQGGILLISTVVILVNLL
VDVLYGVINPRIRHRR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=64.6017699115044, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=42.9850746268657, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1787761, Length=318, Percent_Identity=50.314465408805, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1787550, Length=339, Percent_Identity=36.283185840708, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1789888, Length=338, Percent_Identity=35.207100591716, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=34.3283582089552, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1788504, Length=376, Percent_Identity=25, Blast_Score=134, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36529; Mature: 36529

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
PLWEQYLTYLGKALQGDLGNSIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGML
HHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGILGWTPVSGRIDSIMWIDTVTG
HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
FMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
PAVQGGILLISTVVILVNLLVDVLYGVINPRIRHRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
PLWEQYLTYLGKALQGDLGNSIVTRQPVIEEFKTLFPATIELGVFAMVFAVLIGIPAGML
HHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGILGWTPVSGRIDSIMWIDTVTG
HHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
FMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARAK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
PAVQGGILLISTVVILVNLLVDVLYGVINPRIRHRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]