Definition | Shigella boydii Sb227, complete genome. |
---|---|
Accession | NC_007613 |
Length | 4,519,823 |
Click here to switch to the map view.
The map label for this gene is 82546091
Identifier: 82546091
GI number: 82546091
Start: 3755385
End: 3756026
Strand: Reverse
Name: 82546091
Synonym: SBO_3738
Alternate gene names: NA
Gene position: 3756026-3755385 (Counterclockwise)
Preceding gene: 82546092
Following gene: 82546090
Centisome position: 83.1
GC content: 49.53
Gene sequence:
>642_bases ATGAGTACGCAACCCATCATTATTGAGTTCGGCAGCTATCGCTGGCCCAGACATCTTGCAATACATGAAGCAGATCATGC GATAGCCGCATGGTTTTTCGGCATACAGGAGGTAGAAATTGCGTTATCGGGTAATAACCGAGTGGCAAAAACCTACCTTA GCGGCGATGTTGATGAATGTGGAGCTGTCGCGGTATGGCACGCCAACTATCCACGGAATGTGGCTGAGGTTAAGTCTTAC ACCCTCTCGAATGATGACACCAGGTTACGTCTGATAGACCAGGTATGCCGGGCTATGGTTATCTCTCTGGCTGGTATCGT CGCGCAATCACGCTATACGGGGGATGATATTAACGCACTGATGGAAACGTCCGGGAAAGCAGACATGAAAAATGTTCGTG ATTTATCAGAGGTATACCGGGTGGCTGGTGGGGAGGATGCTGATATACAGAGAATATCCCTTTCCCGTGCTGAGGCGCTG ATTGCCCTGAAATGGTGGGATGTTATCGCGCTGGCGAAAATACTGGAGAACCGTAACCATATGCCTGCCAGCAACTTCCA GCGCATTATGGGTGATATTGACAAGCCTGTACCAAAGCCTATGACGCTGGCTGAACTGGATGAATTGGTGGGTGAAGAAT GA
Upstream 100 bases:
>100_bases CAGGCAACGGACGCGCTGAGACGTGCGCAGCAGCCATCCCGTGATGAATACGACCAACGCCCACCATTCGACGATGAAAC GCCATTCTGAGAGGGAAGAT
Downstream 100 bases:
>100_bases AGCCATACATTCTGGCAGCCGGCCTGATCTCCTCGGCACCGGCACTATCTGCTATCCATTGTGGGGGCTTTACCATACAG CCAGACCGTTATCGGACAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSGNNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSY TLSNDDTRLRLIDQVCRAMVISLAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL IALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE
Sequences:
>Translated_213_residues MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSGNNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSY TLSNDDTRLRLIDQVCRAMVISLAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL IALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE >Mature_212_residues STQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSGNNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYT LSNDDTRLRLIDQVCRAMVISLAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEALI ALKWWDVIALAKILENRNHMPASNFQRIMGDIDKPVPKPMTLAELDELVGEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23755; Mature: 23624
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSGNNRVAKTYLSGDVDEC CCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCC GAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVISLAGIVAQSRYTGDDINAL CEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH METSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEALIALKWWDVIALAKILENRNH HHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MPASNFQRIMGDIDKPVPKPMTLAELDELVGEE CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure STQPIIIEFGSYRWPRHLAIHEADHAIAAWFFGIQEVEIALSGNNRVAKTYLSGDVDEC CCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCC GAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVISLAGIVAQSRYTGDDINAL CEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH METSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEALIALKWWDVIALAKILENRNH HHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MPASNFQRIMGDIDKPVPKPMTLAELDELVGEE CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA