Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is ssb [C]
Identifier: 82546092
GI number: 82546092
Start: 3756037
End: 3756471
Strand: Reverse
Name: ssb [C]
Synonym: SBO_3739
Alternate gene names: 82546092
Gene position: 3756471-3756037 (Counterclockwise)
Preceding gene: 82546096
Following gene: 82546091
Centisome position: 83.11
GC content: 60.23
Gene sequence:
>435_bases ATGACAGCACAAATTTCAGCATACGGGCGGCTGGTGGCAGATCCCCAGACCCGCACCACAACGAACGGTAACAACATGGC TATGGCGCGGCTGGCGGTGTCTCTCCCCTGTAATGCGGCAGAGGCGGGAGAGTCAACCTTCTGGCTGGGCGTTATTGCTT TTGGGAAGCAGGCCGATGCGCTGGCAAAGCACCAGAAAGGCGACCTTGTGAGCGTGGCAGGCAATATGCAACTCAACCAG TGGACAGGGCAGGACGGCGGTACACAGCAGGGGTATCAGGTAGTAGCCGACAGTGTGATCAGCGCCAGAACGGTACGCCC CGGCGGGAAGGCAGGACAGCGGGGACAGGCAACGGACGCGCTGAGACGTGCGCAGCAGCCATCCCGTGATGAATACGACC AACGCCCACCATTCGACGATGAAACGCCATTCTGA
Upstream 100 bases:
>100_bases ACAGAGACAACACTATTTTTGCTTACTATGAAAAAAAATCGGCAGGTGTCCCACATTAAGAAATCGTCATTAGCAAAACT AATAATCCAGTGAGGGGAAA
Downstream 100 bases:
>100_bases GAGGGAAGATATGAGTACGCAACCCATCATTATTGAGTTCGGCAGCTATCGCTGGCCCAGACATCTTGCAATACATGAAG CAGATCATGCGATAGCCGCA
Product: single stranded DNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGESTFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQ WTGQDGGTQQGYQVVADSVISARTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF
Sequences:
>Translated_144_residues MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGESTFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQ WTGQDGGTQQGYQVVADSVISARTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF >Mature_143_residues TAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGESTFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQW TGQDGGTQQGYQVVADSVISARTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF
Specific function: This Protein Is Essential For Replication Of The Chromosomes And Its Single-Stranded DNA Phages. It Is Also Involved In DNA Recombination And Repair. [C]
COG id: COG0629
COG function: function code L; Single-stranded DNA-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15398; Mature: 15267
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS50935 SSB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGESTFWLGVIAFGKQADA CCCCCCCCCEEEECCCCCEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCHHH LAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISARTVRPGGKAGQRGQATDA HHHHCCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH LRRAQQPSRDEYDQRPPFDDETPF HHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGESTFWLGVIAFGKQADA CCCCCCCCEEEECCCCCEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCHHH LAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISARTVRPGGKAGQRGQATDA HHHHCCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH LRRAQQPSRDEYDQRPPFDDETPF HHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA