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The map label for this gene is glgB [H]

Identifier: 78778969

GI number: 78778969

Start: 543609

End: 545873

Strand: Reverse

Name: glgB [H]

Synonym: PMT9312_0584

Alternate gene names: 78778969

Gene position: 545873-543609 (Counterclockwise)

Preceding gene: 78778970

Following gene: 78778968

Centisome position: 31.94

GC content: 35.14

Gene sequence:

>2265_bases
ATGATCGAGACAATTCAAGCAGACTGGATTCAATCAGAAGCTATCAACCTAGAAAATTGTTGCAATGATAATCCATTAAA
AATATTAGGTCCTCATTTTTATGAAGAGCAATGGGTAATAAGGGTATGGATGCCTGAAGCCGACGAAGTTAAAATAAATT
TTAAAAATAATACCTATAAGGCGGAAAGCATAAACCATAAATGGCTTTTTGAAGCAATCCTGCCTGAAAATCCAGAGTCT
AATTACGAAATAAATATTTCACGAGGAGGGATCACACATACACAACATGACCCCTGGTCATATATAGAAGAGTGGATGGG
AGAAGTTGATAGACATCTTTTTGCAGAAGGTAATCATCATCATATTTGGGAAAAAATGGGAGCACATCTCATTGAAGAAA
AAAATCAAAAAGGTGTCATGTTCTGCATTTGGGCTCCAAATGCAAAATCAATCTCGATAATTGGAGATATAAATTCTTGG
GATGGAAGACATCATCCAATGCAAAAAAGATTAGGAGGAATTTGGGAACTATTCATGCCAACAATGGAAGAGGGAGATAC
ATATAAATATGAAATAAGAACACAACAAGGTCATATTTATGAGAAAGCTGATCCATATGGTTTCCTTCATGAAATCAGAC
CTCAAAATGGTTCAATAGTTTCAAAATTGAAAAACTTTAATTGGAATGATAATGCTTGGATTACAAATAGAGATTCCTCT
AGTCAAATCAATAAGCCAATCTCAGTTTATGAGATGCATTTAGGAAGTTGGCTCCATGAATCAACAGATAATAAATATAT
TGAAGACAATGGGAATCCTAGAAACCCAGTACCTGCTGCAGATTTAAAACCTGGAACAAGACTTTTAACTTATCCAGAAT
TAACCGAAAAACTCATCCCTTATGTAAAAGATAGAGGATTTACTCATATTGAACTAATGCCAATATCTGAACATCCTTTC
GATGGTTCATGGGGATACCAGGTTACAGGTTGGTATGCACCTACAAGTAGGTTTGGCACTCCAAATGAATTTAGAGAGTT
TGTAAATAAATGTCATGAAGAGGGAATAGGAGTAATTCTTGATTGGGTACCTGGTCATTTTCCAAAAGACAAGCATGGCT
TAGCATTTTTTGATGGTTGTCATCTTTATGAACATGGGGATTCACGCATAGGTGAACACAAAGAATGGGGAACTTTAATT
TTTAATTACAGCAGAAACGAAGTAAGGAATTTCCTAGTAGCCAATCTGGTTTATTGGTTTGAAGAATTTCATATTGATGG
CATACGAGTAGATGCAGTAGCTTCAATGCTATACAGAGACTATCTACGCCCAGATGGAGAATGGATACCTAATGAGAATG
GTGGGAATGAAAATATAGAAGCCGTTAAATTTCTTCAACAGGCTAATCATGTACTCTTCCAACATTTCCCTGGTGCACTT
TCTATTGCTGAAGAATCAACAACTTGGCCAATGGTAACCAAACCAACAGATATGGGAGGATTAGGGTTTAATTTAAAATG
GAATATGGGTTGGATGCACGATATGCTCGATTATTTTGAGATAGATCCTTGGTTCAGACAATTCCATCAAAATAGTGTAA
CTTTCTCCATAACATATAACTATACAGAGAACTTTATGCTTGCTCTCAGTCATGATGAAGTAGTCCATGGAAAAAGTCAT
CTTTTACATAAAATGCCTGGCGACGACTGGAAGAAATATGCAAATACTCGTGCATTACTAACTTATATGTGGACCCATCC
AGGTAAAAAAACAATATTTATGGGAATGGAATTTGGACAAAGACAAGAATGGAATGTTTGGGATGATCTTCAATGGGATT
TACTAGAATTTGAACCTCATAAAGGGATCAGAAACTTGGTTGATGATCTAAATGCACTTTATAAAAATGAACCTGCGTTA
TGGAAAAATGACTTTGATCCTTATGGATTCCAATGGATTGACTGTAATGACAAATCTAATTCAGTAATAAGTTTCATGAG
AAGAGAGAACGACACTAATGAATGGCTTGTTATTGTTGCTAACTTTACACCTAATACTCATGATTCATATAAAGTAGGTG
TTCCTGTAGAAGGATTCTATAAAGAGATATTTAATTCTGATGGCTCTAGATACGGAGGCAGTAATAAAGGAAATATGGGA
GGTAAAGAAGCTATAAATTACAATATTCATGATTATCAAAATGCTCTAGAACTTGCTTTGCCGCCATTAAGCGTGAGTAT
CTTCAAACATCAATCAAAAAAATAA

Upstream 100 bases:

>100_bases
AGCCTTAATAAAACATTTATGAAAATGAACCCTTTTTTTGATAAATAATTATTTTTTTGGTTAATCATTTGATATTATTA
ATCCTTAATATCTACCAGTC

Downstream 100 bases:

>100_bases
GAAGGCTCATTTAACTTACTGCTTCATATAAATGTTCATATAACACTTTTGATCTGCTTTGCATTGTAAGATTTTTAAGT
TGGAATTTTATTTTTTTTTA

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 754; Mature: 754

Protein sequence:

>754_residues
MIETIQADWIQSEAINLENCCNDNPLKILGPHFYEEQWVIRVWMPEADEVKINFKNNTYKAESINHKWLFEAILPENPES
NYEINISRGGITHTQHDPWSYIEEWMGEVDRHLFAEGNHHHIWEKMGAHLIEEKNQKGVMFCIWAPNAKSISIIGDINSW
DGRHHPMQKRLGGIWELFMPTMEEGDTYKYEIRTQQGHIYEKADPYGFLHEIRPQNGSIVSKLKNFNWNDNAWITNRDSS
SQINKPISVYEMHLGSWLHESTDNKYIEDNGNPRNPVPAADLKPGTRLLTYPELTEKLIPYVKDRGFTHIELMPISEHPF
DGSWGYQVTGWYAPTSRFGTPNEFREFVNKCHEEGIGVILDWVPGHFPKDKHGLAFFDGCHLYEHGDSRIGEHKEWGTLI
FNYSRNEVRNFLVANLVYWFEEFHIDGIRVDAVASMLYRDYLRPDGEWIPNENGGNENIEAVKFLQQANHVLFQHFPGAL
SIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDYFEIDPWFRQFHQNSVTFSITYNYTENFMLALSHDEVVHGKSH
LLHKMPGDDWKKYANTRALLTYMWTHPGKKTIFMGMEFGQRQEWNVWDDLQWDLLEFEPHKGIRNLVDDLNALYKNEPAL
WKNDFDPYGFQWIDCNDKSNSVISFMRRENDTNEWLVIVANFTPNTHDSYKVGVPVEGFYKEIFNSDGSRYGGSNKGNMG
GKEAINYNIHDYQNALELALPPLSVSIFKHQSKK

Sequences:

>Translated_754_residues
MIETIQADWIQSEAINLENCCNDNPLKILGPHFYEEQWVIRVWMPEADEVKINFKNNTYKAESINHKWLFEAILPENPES
NYEINISRGGITHTQHDPWSYIEEWMGEVDRHLFAEGNHHHIWEKMGAHLIEEKNQKGVMFCIWAPNAKSISIIGDINSW
DGRHHPMQKRLGGIWELFMPTMEEGDTYKYEIRTQQGHIYEKADPYGFLHEIRPQNGSIVSKLKNFNWNDNAWITNRDSS
SQINKPISVYEMHLGSWLHESTDNKYIEDNGNPRNPVPAADLKPGTRLLTYPELTEKLIPYVKDRGFTHIELMPISEHPF
DGSWGYQVTGWYAPTSRFGTPNEFREFVNKCHEEGIGVILDWVPGHFPKDKHGLAFFDGCHLYEHGDSRIGEHKEWGTLI
FNYSRNEVRNFLVANLVYWFEEFHIDGIRVDAVASMLYRDYLRPDGEWIPNENGGNENIEAVKFLQQANHVLFQHFPGAL
SIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDYFEIDPWFRQFHQNSVTFSITYNYTENFMLALSHDEVVHGKSH
LLHKMPGDDWKKYANTRALLTYMWTHPGKKTIFMGMEFGQRQEWNVWDDLQWDLLEFEPHKGIRNLVDDLNALYKNEPAL
WKNDFDPYGFQWIDCNDKSNSVISFMRRENDTNEWLVIVANFTPNTHDSYKVGVPVEGFYKEIFNSDGSRYGGSNKGNMG
GKEAINYNIHDYQNALELALPPLSVSIFKHQSKK
>Mature_754_residues
MIETIQADWIQSEAINLENCCNDNPLKILGPHFYEEQWVIRVWMPEADEVKINFKNNTYKAESINHKWLFEAILPENPES
NYEINISRGGITHTQHDPWSYIEEWMGEVDRHLFAEGNHHHIWEKMGAHLIEEKNQKGVMFCIWAPNAKSISIIGDINSW
DGRHHPMQKRLGGIWELFMPTMEEGDTYKYEIRTQQGHIYEKADPYGFLHEIRPQNGSIVSKLKNFNWNDNAWITNRDSS
SQINKPISVYEMHLGSWLHESTDNKYIEDNGNPRNPVPAADLKPGTRLLTYPELTEKLIPYVKDRGFTHIELMPISEHPF
DGSWGYQVTGWYAPTSRFGTPNEFREFVNKCHEEGIGVILDWVPGHFPKDKHGLAFFDGCHLYEHGDSRIGEHKEWGTLI
FNYSRNEVRNFLVANLVYWFEEFHIDGIRVDAVASMLYRDYLRPDGEWIPNENGGNENIEAVKFLQQANHVLFQHFPGAL
SIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDYFEIDPWFRQFHQNSVTFSITYNYTENFMLALSHDEVVHGKSH
LLHKMPGDDWKKYANTRALLTYMWTHPGKKTIFMGMEFGQRQEWNVWDDLQWDLLEFEPHKGIRNLVDDLNALYKNEPAL
WKNDFDPYGFQWIDCNDKSNSVISFMRRENDTNEWLVIVANFTPNTHDSYKVGVPVEGFYKEIFNSDGSRYGGSNKGNMG
GKEAINYNIHDYQNALELALPPLSVSIFKHQSKK

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=658, Percent_Identity=27.355623100304, Blast_Score=200, Evalue=5e-51,
Organism=Escherichia coli, GI1789839, Length=747, Percent_Identity=45.3815261044177, Blast_Score=659, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=644, Percent_Identity=25.1552795031056, Blast_Score=173, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI32564391, Length=616, Percent_Identity=25, Blast_Score=153, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6320826, Length=648, Percent_Identity=28.0864197530864, Blast_Score=181, Evalue=3e-46,
Organism=Drosophila melanogaster, GI28573410, Length=718, Percent_Identity=25.4874651810585, Blast_Score=202, Evalue=6e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 88106; Mature: 88106

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETIQADWIQSEAINLENCCNDNPLKILGPHFYEEQWVIRVWMPEADEVKINFKNNTYK
CCCCCCHHHHHHHCCCHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEE
AESINHKWLFEAILPENPESNYEINISRGGITHTQHDPWSYIEEWMGEVDRHLFAEGNHH
ECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
HIWEKMGAHLIEEKNQKGVMFCIWAPNAKSISIIGDINSWDGRHHPMQKRLGGIWELFMP
HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
TMEEGDTYKYEIRTQQGHIYEKADPYGFLHEIRPQNGSIVSKLKNFNWNDNAWITNRDSS
CCCCCCCEEEEEEECCCCEEECCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEECCCCC
SQINKPISVYEMHLGSWLHESTDNKYIEDNGNPRNPVPAADLKPGTRLLTYPELTEKLIP
HHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH
YVKDRGFTHIELMPISEHPFDGSWGYQVTGWYAPTSRFGTPNEFREFVNKCHEEGIGVIL
HHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE
DWVPGHFPKDKHGLAFFDGCHLYEHGDSRIGEHKEWGTLIFNYSRNEVRNFLVANLVYWF
ECCCCCCCCCCCCEEEEECEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
EEFHIDGIRVDAVASMLYRDYLRPDGEWIPNENGGNENIEAVKFLQQANHVLFQHFPGAL
HHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
SIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDYFEIDPWFRQFHQNSVTFSITYN
EECCCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCCEEEEEEEE
YTENFMLALSHDEVVHGKSHLLHKMPGDDWKKYANTRALLTYMWTHPGKKTIFMGMEFGQ
CCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCC
RQEWNVWDDLQWDLLEFEPHKGIRNLVDDLNALYKNEPALWKNDFDPYGFQWIDCNDKSN
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC
SVISFMRRENDTNEWLVIVANFTPNTHDSYKVGVPVEGFYKEIFNSDGSRYGGSNKGNMG
HHHHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCC
GKEAINYNIHDYQNALELALPPLSVSIFKHQSKK
CCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MIETIQADWIQSEAINLENCCNDNPLKILGPHFYEEQWVIRVWMPEADEVKINFKNNTYK
CCCCCCHHHHHHHCCCHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEE
AESINHKWLFEAILPENPESNYEINISRGGITHTQHDPWSYIEEWMGEVDRHLFAEGNHH
ECCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
HIWEKMGAHLIEEKNQKGVMFCIWAPNAKSISIIGDINSWDGRHHPMQKRLGGIWELFMP
HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
TMEEGDTYKYEIRTQQGHIYEKADPYGFLHEIRPQNGSIVSKLKNFNWNDNAWITNRDSS
CCCCCCCEEEEEEECCCCEEECCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEECCCCC
SQINKPISVYEMHLGSWLHESTDNKYIEDNGNPRNPVPAADLKPGTRLLTYPELTEKLIP
HHCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH
YVKDRGFTHIELMPISEHPFDGSWGYQVTGWYAPTSRFGTPNEFREFVNKCHEEGIGVIL
HHHCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEE
DWVPGHFPKDKHGLAFFDGCHLYEHGDSRIGEHKEWGTLIFNYSRNEVRNFLVANLVYWF
ECCCCCCCCCCCCEEEEECEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
EEFHIDGIRVDAVASMLYRDYLRPDGEWIPNENGGNENIEAVKFLQQANHVLFQHFPGAL
HHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
SIAEESTTWPMVTKPTDMGGLGFNLKWNMGWMHDMLDYFEIDPWFRQFHQNSVTFSITYN
EECCCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCCEEEEEEEE
YTENFMLALSHDEVVHGKSHLLHKMPGDDWKKYANTRALLTYMWTHPGKKTIFMGMEFGQ
CCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCC
RQEWNVWDDLQWDLLEFEPHKGIRNLVDDLNALYKNEPALWKNDFDPYGFQWIDCNDKSN
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC
SVISFMRRENDTNEWLVIVANFTPNTHDSYKVGVPVEGFYKEIFNSDGSRYGGSNKGNMG
HHHHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCCCC
GKEAINYNIHDYQNALELALPPLSVSIFKHQSKK
CCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA