Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 78778465

GI number: 78778465

Start: 84525

End: 85814

Strand: Direct

Name: rarA [H]

Synonym: PMT9312_0080

Alternate gene names: 78778465

Gene position: 84525-85814 (Clockwise)

Preceding gene: 78778464

Following gene: 78778467

Centisome position: 4.95

GC content: 30.0

Gene sequence:

>1290_bases
ATGCATTCCGAAAATTTATTTACCAATTATTCTCAAATAGAAAGTAATGCTCCTTTGGCAGATAAGTTGAGACCAAAGAA
TTTAGACGATTTTTTTGGTCAAAAATCAATCTTAAATGAGAATTCGCTCTTAAGGAGTGCCATATTAAACGATAAGATTA
GTAATTTTATTTTTTCTGGCCCTCCTGGTGTGGGGAAAACTACTTTAATTGAAATTATTGCTTTTAATACGCGTTCAAAA
TTAATTAAATTAAACGCTGTATTATCAAGTATCAAAGAATTAAGAAATGAAATCGCTAATGCAAAAGAAAGATTAATAAA
TACAAAAAGAAAAACAATTTTATTTATCGATGAGGTGCATAGATTTACATCTGTGCAGCAAGATGCTTTATTACCCTCAA
TAGAGAATGGAACTATAACTTTTATAGGTGCTACAACTGAAAACCCCTTCTTTGCAGTTAATAAAGCGCTTGTTAGTAGG
TCTCGCATTTTTACATTAATTCCTTTAAGTGAAACTGATTTGAAGAAAATTATAAAAAAAGTTATAAGTTACTATGCAAA
ACTTAAGGAACCAAAAAAGGTTTGTTTAACTCAGGATGCAATAAATCATTTAATTAAATTTTCTGGTGGTGATGCAAGAA
CACTAATCAATGCATTAGAGATGGCAATAGGAACAACTGATGAAAATGAAGCTGAAGAAATTAATATTAATCTCTCAATT
GCAGAGGATGCAATTCAAAAGAAAAATATTGTTTACGATAAAAATGGTCAAAATCATTACGATATAGTAAGTGCATTTAT
TAAGTCCATTAGAGGTTCTGATCCAGATGCAACTTTATTTTGGCTTGCAAATATGCTGGAAGCTGGCGAAGATCCTAATT
TTATTTTTAGAAGACTTCTTATATCTGCCAGTGAAGATATTGGGATTGCTGATCCTAATGCCATAGTAGTTGTACAATCG
TGTTGTAATGCTTTTGATAGAGTTGGTTTTCCAGAGGGATTATATTTTTTAACACAAGCTTCCTTGTATTTAGCTATTTC
TCCAAAAAGTAATAGTACGAAAAAGATTTTTAAAGCAATTGAAACATTCAAATCTATCAATGCTTATGAAGTTCCAAGTC
ATTTAAAAAATAATTCTAATAGTTATGTTAATCCTCATAATTATCCAGGAAATTGGGTCGCACAAGAATATCTTCCCATA
GCTGTACGAGGTTTAAAAATATGGGAACCAAATAATAATGGATGGGAAAAAATTAAATATGATGAATTGCTTAGAAGAAA
AGAAAACTAA

Upstream 100 bases:

>100_bases
ATAATTTAGATGATTTGTTAAATATTTCAAAACTTACTCAAATGCAAACTCCTACGGTAATTACATAGACTTTAAAGTAA
TATTTCTTGATTTAATTTAT

Downstream 100 bases:

>100_bases
AAATTTTTCGAACAACAAATAATCTCAGTATTAAAAGAAGTTTTTTCTTCGTAGGCTAAAGCTATAGTCCAATTATGAAA
ATTAATTTGAGAATAATGTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MHSENLFTNYSQIESNAPLADKLRPKNLDDFFGQKSILNENSLLRSAILNDKISNFIFSGPPGVGKTTLIEIIAFNTRSK
LIKLNAVLSSIKELRNEIANAKERLINTKRKTILFIDEVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSR
SRIFTLIPLSETDLKKIIKKVISYYAKLKEPKKVCLTQDAINHLIKFSGGDARTLINALEMAIGTTDENEAEEININLSI
AEDAIQKKNIVYDKNGQNHYDIVSAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPNAIVVVQS
CCNAFDRVGFPEGLYFLTQASLYLAISPKSNSTKKIFKAIETFKSINAYEVPSHLKNNSNSYVNPHNYPGNWVAQEYLPI
AVRGLKIWEPNNNGWEKIKYDELLRRKEN

Sequences:

>Translated_429_residues
MHSENLFTNYSQIESNAPLADKLRPKNLDDFFGQKSILNENSLLRSAILNDKISNFIFSGPPGVGKTTLIEIIAFNTRSK
LIKLNAVLSSIKELRNEIANAKERLINTKRKTILFIDEVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSR
SRIFTLIPLSETDLKKIIKKVISYYAKLKEPKKVCLTQDAINHLIKFSGGDARTLINALEMAIGTTDENEAEEININLSI
AEDAIQKKNIVYDKNGQNHYDIVSAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPNAIVVVQS
CCNAFDRVGFPEGLYFLTQASLYLAISPKSNSTKKIFKAIETFKSINAYEVPSHLKNNSNSYVNPHNYPGNWVAQEYLPI
AVRGLKIWEPNNNGWEKIKYDELLRRKEN
>Mature_429_residues
MHSENLFTNYSQIESNAPLADKLRPKNLDDFFGQKSILNENSLLRSAILNDKISNFIFSGPPGVGKTTLIEIIAFNTRSK
LIKLNAVLSSIKELRNEIANAKERLINTKRKTILFIDEVHRFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSR
SRIFTLIPLSETDLKKIIKKVISYYAKLKEPKKVCLTQDAINHLIKFSGGDARTLINALEMAIGTTDENEAEEININLSI
AEDAIQKKNIVYDKNGQNHYDIVSAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLLISASEDIGIADPNAIVVVQS
CCNAFDRVGFPEGLYFLTQASLYLAISPKSNSTKKIFKAIETFKSINAYEVPSHLKNNSNSYVNPHNYPGNWVAQEYLPI
AVRGLKIWEPNNNGWEKIKYDELLRRKEN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=443, Percent_Identity=35.665914221219, Blast_Score=265, Evalue=4e-71,
Organism=Homo sapiens, GI18426904, Length=443, Percent_Identity=31.8284424379233, Blast_Score=216, Evalue=3e-56,
Organism=Escherichia coli, GI1787119, Length=411, Percent_Identity=37.712895377129, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI1788167, Length=121, Percent_Identity=30.5785123966942, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71986063, Length=245, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=37.0023419203747, Blast_Score=263, Evalue=4e-71,
Organism=Saccharomyces cerevisiae, GI6324039, Length=266, Percent_Identity=28.1954887218045, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19921076, Length=223, Percent_Identity=29.1479820627803, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859927, Length=218, Percent_Identity=26.605504587156, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48265; Mature: 48265

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSENLFTNYSQIESNAPLADKLRPKNLDDFFGQKSILNENSLLRSAILNDKISNFIFSG
CCCCCCCCCHHHHCCCCCCHHCCCCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHCEECC
PPGVGKTTLIEIIAFNTRSKLIKLNAVLSSIKELRNEIANAKERLINTKRKTILFIDEVH
CCCCCHHHEEHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH
RFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLIPLSETDLKKIIKK
HHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHH
VISYYAKLKEPKKVCLTQDAINHLIKFSGGDARTLINALEMAIGTTDENEAEEININLSI
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
AEDAIQKKNIVYDKNGQNHYDIVSAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLL
HHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
ISASEDIGIADPNAIVVVQSCCNAFDRVGFPEGLYFLTQASLYLAISPKSNSTKKIFKAI
HHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHEEECEEEEEECCCCCCHHHHHHHH
ETFKSINAYEVPSHLKNNSNSYVNPHNYPGNWVAQEYLPIAVRGLKIWEPNNNGWEKIKY
HHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCCCEECH
DELLRRKEN
HHHHHHCCC
>Mature Secondary Structure
MHSENLFTNYSQIESNAPLADKLRPKNLDDFFGQKSILNENSLLRSAILNDKISNFIFSG
CCCCCCCCCHHHHCCCCCCHHCCCCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHCEECC
PPGVGKTTLIEIIAFNTRSKLIKLNAVLSSIKELRNEIANAKERLINTKRKTILFIDEVH
CCCCCHHHEEHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH
RFTSVQQDALLPSIENGTITFIGATTENPFFAVNKALVSRSRIFTLIPLSETDLKKIIKK
HHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHH
VISYYAKLKEPKKVCLTQDAINHLIKFSGGDARTLINALEMAIGTTDENEAEEININLSI
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
AEDAIQKKNIVYDKNGQNHYDIVSAFIKSIRGSDPDATLFWLANMLEAGEDPNFIFRRLL
HHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
ISASEDIGIADPNAIVVVQSCCNAFDRVGFPEGLYFLTQASLYLAISPKSNSTKKIFKAI
HHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHEEECEEEEEECCCCCCHHHHHHHH
ETFKSINAYEVPSHLKNNSNSYVNPHNYPGNWVAQEYLPIAVRGLKIWEPNNNGWEKIKY
HHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEECCCCCCCCEECH
DELLRRKEN
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]