Click here to switch to the map view.

The map label for this gene is 78778423

Identifier: 78778423

GI number: 78778423

Start: 36581

End: 38065

Strand: Reverse

Name: 78778423

Synonym: PMT9312_0038

Alternate gene names: NA

Gene position: 38065-36581 (Counterclockwise)

Preceding gene: 78778427

Following gene: 78778420

Centisome position: 2.23

GC content: 28.01

Gene sequence:

>1485_bases
ATGAAAGGTTTTGGCGAAAAGAACCAATTAAAGAAAATAAAAACACCAAAAAATGCAGAGATACTAGATAGCGATCAATT
GATTAAAAAAGCATTCACACTGCAAGCACAAGGAAGGACACTAGAAGCAGCAAAACACTATGCATATCTTATTAAACATG
GAATAAAAGACTATAGAGTTTTTTCAAATTATGGAATATTCCTAAACGAAATCGGAAAACACAAAGAAGCAGAATTAGAA
CTTAAAAAAGCAATTTCTTTAAATCCTAAATATGCAAATGCTTACTACAATCTGGCAGTTTTATTTATTGGTCAAGGAAA
TTTGGGGAAAGCAGAATTAGAACTTAAAAAAGCAATAAAACTTAAATCAGACTTTGCTATTGCTTACTATAATCTTGGAT
TTATTTTAAAAGATCTGGGTAGATTAAAAGAGGCAGATTCATATAATCAAAAAGCAGTTGAAATAGATCCTCACTTGACT
GATGCATATTTATCATTATCAACTATGTATTCTGGTGATAAAACTCCAAAATGGCACAATCAACTTTTTTCTGAAAGTCT
TATAAAAAACAAAAATAATAGAGAATTAATAAATATTTTTTTCGCAAGATCAAATATTTTTCATAGAGAAGGAAAATATC
AAGAAAGCGCTGAGAATCTTATTAATGCAAATAATATCAAACTTAGATTGAATAAATCTGAAGCAAATTTATTAATCAAT
AAAACTAAAAAGTTGAAAATATCCTCAGATAATTATGAAAGAAAAAATAAAGCATTTGGAAATTATCCAATGTCTATTTT
TATAGTAGGACTTCCTAGATGTGGTTCTACCCTGGTTGAATCAATCATAAGTTTGAATTCTCATGTAAGAGATCTTGGAG
AAGTCAATATCTTTGAAAAATCATATAGAGAATATAAAGAATCTGAAAAAAAAACAGACCTTAGTGAAATATATTGGAAA
AAATTAGAAATAACCAAAAATAAAAGATCCACAACAAATAAATGGTTATTTAATTATCAATATGCAGGCATAATTGCACA
AGCAATTCCTAATGCAAAAATAATACATTGCTATAGAAATCCTTTAGATAATATCCTTTCTATGTATAGAGCACATTTCG
CAACAGGGAATAATTTCTCTTCAAGTTTGGTTGATTCTGTTGCAGTTTATTCTGATCAAGAGGAGATCATGAAAATATAC
AAAAAAGAATTTAAAAATCATATATATGAATTAAATTACGATAAATTAGTGACTCATCCTTCAGAAGAGATAAAATCATT
AATTCTTTGGTTAGGTTGGAAATGGAATGATTTATATTTATCGCCACATTTAAATAATCGTAAAGTCTCAACAAGAAGCA
ATGTTGAGGTTCGTTCACCAATCACTACAAAATCTTTAGGAGGATGGAAAAACTATAAAGAGATGCTTAGACCTGCAATG
GAAATCATTACTCAAAAGGATCAATATAAAGACCTAAAGTATTAA

Upstream 100 bases:

>100_bases
GGAATTACAATTAAATTAATCATTAATCTACTTAGTAAACAATTTATAAAAACTTTACGTTAAGACTATAATCGCTATAA
AGAAATTATCTTTATAAATA

Downstream 100 bases:

>100_bases
TCAGTAATAATATCCATAAAACATCGCAAAAAACCCTGTAATCCTTTACTCCCATTCAATAGAACCTCTTGATTTCGAAC
CTTGAAACACATTGGTATCA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MKGFGEKNQLKKIKTPKNAEILDSDQLIKKAFTLQAQGRTLEAAKHYAYLIKHGIKDYRVFSNYGIFLNEIGKHKEAELE
LKKAISLNPKYANAYYNLAVLFIGQGNLGKAELELKKAIKLKSDFAIAYYNLGFILKDLGRLKEADSYNQKAVEIDPHLT
DAYLSLSTMYSGDKTPKWHNQLFSESLIKNKNNRELINIFFARSNIFHREGKYQESAENLINANNIKLRLNKSEANLLIN
KTKKLKISSDNYERKNKAFGNYPMSIFIVGLPRCGSTLVESIISLNSHVRDLGEVNIFEKSYREYKESEKKTDLSEIYWK
KLEITKNKRSTTNKWLFNYQYAGIIAQAIPNAKIIHCYRNPLDNILSMYRAHFATGNNFSSSLVDSVAVYSDQEEIMKIY
KKEFKNHIYELNYDKLVTHPSEEIKSLILWLGWKWNDLYLSPHLNNRKVSTRSNVEVRSPITTKSLGGWKNYKEMLRPAM
EIITQKDQYKDLKY

Sequences:

>Translated_494_residues
MKGFGEKNQLKKIKTPKNAEILDSDQLIKKAFTLQAQGRTLEAAKHYAYLIKHGIKDYRVFSNYGIFLNEIGKHKEAELE
LKKAISLNPKYANAYYNLAVLFIGQGNLGKAELELKKAIKLKSDFAIAYYNLGFILKDLGRLKEADSYNQKAVEIDPHLT
DAYLSLSTMYSGDKTPKWHNQLFSESLIKNKNNRELINIFFARSNIFHREGKYQESAENLINANNIKLRLNKSEANLLIN
KTKKLKISSDNYERKNKAFGNYPMSIFIVGLPRCGSTLVESIISLNSHVRDLGEVNIFEKSYREYKESEKKTDLSEIYWK
KLEITKNKRSTTNKWLFNYQYAGIIAQAIPNAKIIHCYRNPLDNILSMYRAHFATGNNFSSSLVDSVAVYSDQEEIMKIY
KKEFKNHIYELNYDKLVTHPSEEIKSLILWLGWKWNDLYLSPHLNNRKVSTRSNVEVRSPITTKSLGGWKNYKEMLRPAM
EIITQKDQYKDLKY
>Mature_494_residues
MKGFGEKNQLKKIKTPKNAEILDSDQLIKKAFTLQAQGRTLEAAKHYAYLIKHGIKDYRVFSNYGIFLNEIGKHKEAELE
LKKAISLNPKYANAYYNLAVLFIGQGNLGKAELELKKAIKLKSDFAIAYYNLGFILKDLGRLKEADSYNQKAVEIDPHLT
DAYLSLSTMYSGDKTPKWHNQLFSESLIKNKNNRELINIFFARSNIFHREGKYQESAENLINANNIKLRLNKSEANLLIN
KTKKLKISSDNYERKNKAFGNYPMSIFIVGLPRCGSTLVESIISLNSHVRDLGEVNIFEKSYREYKESEKKTDLSEIYWK
KLEITKNKRSTTNKWLFNYQYAGIIAQAIPNAKIIHCYRNPLDNILSMYRAHFATGNNFSSSLVDSVAVYSDQEEIMKIY
KKEFKNHIYELNYDKLVTHPSEEIKSLILWLGWKWNDLYLSPHLNNRKVSTRSNVEVRSPITTKSLGGWKNYKEMLRPAM
EIITQKDQYKDLKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 8 TPR repeats [H]

Homologues:

Organism=Caenorhabditis elegans, GI115532692, Length=146, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=146, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000863
- InterPro:   IPR001440
- InterPro:   IPR011717
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00685 Sulfotransfer_1; PF00515 TPR_1; PF07721 TPR_4 [H]

EC number: NA

Molecular weight: Translated: 57349; Mature: 57349

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFGEKNQLKKIKTPKNAEILDSDQLIKKAFTLQAQGRTLEAAKHYAYLIKHGIKDYRV
CCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHEEE
FSNYGIFLNEIGKHKEAELELKKAISLNPKYANAYYNLAVLFIGQGNLGKAELELKKAIK
CCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHCCEEEEEEEEEECCCCCHHHHHHHHHHH
LKSDFAIAYYNLGFILKDLGRLKEADSYNQKAVEIDPHLTDAYLSLSTMYSGDKTPKWHN
HCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHH
QLFSESLIKNKNNRELINIFFARSNIFHREGKYQESAENLINANNIKLRLNKSEANLLIN
HHHHHHHHCCCCCCEEEEEEEECCCHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEE
KTKKLKISSDNYERKNKAFGNYPMSIFIVGLPRCGSTLVESIISLNSHVRDLGEVNIFEK
CCEEEEECCCCCHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
SYREYKESEKKTDLSEIYWKKLEITKNKRSTTNKWLFNYQYAGIIAQAIPNAKIIHCYRN
HHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCEEEEEEHHHHHHHHCCCCEEEEEHHC
PLDNILSMYRAHFATGNNFSSSLVDSVAVYSDQEEIMKIYKKEFKNHIYELNYDKLVTHP
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCHHHHCCC
SEEIKSLILWLGWKWNDLYLSPHLNNRKVSTRSNVEVRSPITTKSLGGWKNYKEMLRPAM
HHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
EIITQKDQYKDLKY
HHHHCCHHHCCCCC
>Mature Secondary Structure
MKGFGEKNQLKKIKTPKNAEILDSDQLIKKAFTLQAQGRTLEAAKHYAYLIKHGIKDYRV
CCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHEEE
FSNYGIFLNEIGKHKEAELELKKAISLNPKYANAYYNLAVLFIGQGNLGKAELELKKAIK
CCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHCCEEEEEEEEEECCCCCHHHHHHHHHHH
LKSDFAIAYYNLGFILKDLGRLKEADSYNQKAVEIDPHLTDAYLSLSTMYSGDKTPKWHN
HCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHH
QLFSESLIKNKNNRELINIFFARSNIFHREGKYQESAENLINANNIKLRLNKSEANLLIN
HHHHHHHHCCCCCCEEEEEEEECCCHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEE
KTKKLKISSDNYERKNKAFGNYPMSIFIVGLPRCGSTLVESIISLNSHVRDLGEVNIFEK
CCEEEEECCCCCHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
SYREYKESEKKTDLSEIYWKKLEITKNKRSTTNKWLFNYQYAGIIAQAIPNAKIIHCYRN
HHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCEEEEEEHHHHHHHHCCCCEEEEEHHC
PLDNILSMYRAHFATGNNFSSSLVDSVAVYSDQEEIMKIYKKEFKNHIYELNYDKLVTHP
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCHHHHCCC
SEEIKSLILWLGWKWNDLYLSPHLNNRKVSTRSNVEVRSPITTKSLGGWKNYKEMLRPAM
HHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHH
EIITQKDQYKDLKY
HHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]