| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is pcrA [H]
Identifier: 78358610
GI number: 78358610
Start: 3527207
End: 3529366
Strand: Reverse
Name: pcrA [H]
Synonym: Dde_3571
Alternate gene names: 78358610
Gene position: 3529366-3527207 (Counterclockwise)
Preceding gene: 78358611
Following gene: 78358609
Centisome position: 94.62
GC content: 58.75
Gene sequence:
>2160_bases ATGATTGATTATAAAAAAGAACTGAACGCGGCTCAGTACGAAGCCGCCACCACCCTCGAAGGCCCCATGCTGGTCATAGC CGGAGCAGGCAGCGGTAAAACCCGCACAGTGGTGTACCGGCTGGCAAACATGGTGCAGCAGGGCATTGCCGCGTCCAATA TTCTTCTGCTTACGTTCACCCGCAAGGCCGCACAGGAAATGCAGCACAGAGCGGCCCAGCTGCTGGGCCAGTCCGCGGGC ATGGTGGGCGGAGTGCAGGGAGGTACGTTCCATGCCTTTGCCTATTCCATTTTGCGCATGCACAAACCGCAGGGGTACGA AGGCGATCTGTCCGTCATGGATTCCGCCGATGCCGCCGGTGCGCTGAAACACTGCAAGGATACGCTGGGACTGGGCAAAG GGGACCGGAGTTTTCCCAAAACGCAGACCGTCATGGGGCTGCTGTCCAAAGCGCGCAACAAGGAACTGACGGTGGAGGAT GTCCTGCGGCGCGAAGCCTTTCACCTGGCATCCTACGCGGGCGATCTTACGCGCATCAGCGACACCTACAGGGCGTTCAA GCGCAGACATGCGCTTATGGATTATGATGACCTGCTGTTTGAGCTGGAAAGGCTGCTGCAGTCCGATGCCGACCTGCTGG CGTACTACCGCGACCGGTTCAGATATATCATGGTGGACGAATTTCAGGACACCAACCTGGTACAGGCGCGGTTGGTGCGT TTGCTGGGCAGCGGCCACAACAACGTGATGGCTGTGGGCGACGACGCGCAGTCCATCTACGCGTTCCGCGGTGCCAATGT GCAGAATATTCTTGATTTTCCTGACATGTTTCCCGGAACGCGTATCATCAAGCTGGAAGAGAATTACCGTTCGGTACAGC CTGTGCTTGATCTGACCAACGCCATTCTGGACGATGCGCCGCAGGCGTTCCGCAAAAAGCTGTTCACCCGGCGCGAAGGA GGTCCTACCCCTCATGTGCTGCGCCCGCTTTCAGACCTGACTCAGGCGTCCATGGTCACATCAAAAATAACCGAGCTGCT GCGTACATACCCACCGGATGAAATCGCCGTGCTGTTCCGCGCCGGATACCAGTCCTACCATGTGGAGATGCAGCTGGGAA AGCTGGGCGTCAAGTTCAAGAAGTACGGCGGGGTTCGTTATTCTGACGCCGCTCATGTCAAGGACGTTCTTTCCTACATA CGGCTGGTGGTCAACCCGCTGGATCTGCCGGCGTTTCAGCGGATGGCTTCGCTGGTAAAGGGCATAGGGGCAAAAACCTG CCTGAAGCTGTACGATGCGGCCCAGAAAGCGGACAGAAGTGTTTTGAAAAAGGCCTGTGCACGGTTTCCCGACCTGCAGC ACGATCTGGACATGCTGGATGCACTGCGGGCAAAGCCGCTTACTCCGGCCGGTCTGACGCAGGCCGTTATTGAGCATTAC CAGCCGCGGCTCGAAGCCAACTATCCTGACGACTACCCCCGCAGACAGCACGGGCTGGAACAGCTTGTCCAGATTGCGGC ATCGTACAACGATGTGGATCTGATGCTTTCGGACCTGTGTCTGGAGGACCCCGCAACGGACAAAGGTGAAGACATCAGCG CGGTCACGTTGTCCACCGTGCATTCCGCCAAGGGGCTGGAATGGTCGGCGGTGCTGCTCATTGATCTGGTGGAAGACCGT TTTCCCTCGCGCCATGCCCTGAACAAGGCAGAGGACTTTGAGGAAGAGCGGCGGCTTATGTATGTGGCGTGCACGCGGGC CCGTGATTATCTGGCGCTGTTTGTGCCTGCCACCATCTACGACCGCAGCGGAGGCGGCAATACACCGGCCAATCCCAGCC CCTTTGTGCGTGACCTGCCCGCCCATCTTTATGAAGACTGGCGCGAAAACTTTACCGGCACGCTTACCCGCAGGCAGGAT GCCCGTCCGGTTACTGTTTCTGCCGCGCGCACGTCCGGCCCTGCGTCCGGCGGTGGCCGGCAGGCGGAACAGGGCGGCGG CGCGCTGGGCAACGGCGGCAGACCGGCTTCGGGGTATTGCACGCACAAGATTTTCGGCAGGGGCAAAATTATTCAGCATG TGCCGCCCGACAAGTACCGCGTCAATTTTCCGGGATTCGGTCTCAAGGTCATTATGGCCCAGTATCTTACTCTGGAATGA
Upstream 100 bases:
>100_bases GTGCTGGAGCATTTCGGTCTGGCCCCTGTCGCACAATCAGGCCGCCCCGCGGCGACGGGGCTTATCCACCCGCCCGGCAA CAAGTAACGATACCATATAT
Downstream 100 bases:
>100_bases TAACGGCCCGCTGCCGCGGCCGCCGCAAAATTCACCGGAACCCACACGGATGCGCATATGAGCACCATGACTTCCGAAGA TGCGTTTCTTGCCTGTATTG
Product: ATP-dependent DNA helicase UvrD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 719; Mature: 719
Protein sequence:
>719_residues MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFTRKAAQEMQHRAAQLLGQSAG MVGGVQGGTFHAFAYSILRMHKPQGYEGDLSVMDSADAAGALKHCKDTLGLGKGDRSFPKTQTVMGLLSKARNKELTVED VLRREAFHLASYAGDLTRISDTYRAFKRRHALMDYDDLLFELERLLQSDADLLAYYRDRFRYIMVDEFQDTNLVQARLVR LLGSGHNNVMAVGDDAQSIYAFRGANVQNILDFPDMFPGTRIIKLEENYRSVQPVLDLTNAILDDAPQAFRKKLFTRREG GPTPHVLRPLSDLTQASMVTSKITELLRTYPPDEIAVLFRAGYQSYHVEMQLGKLGVKFKKYGGVRYSDAAHVKDVLSYI RLVVNPLDLPAFQRMASLVKGIGAKTCLKLYDAAQKADRSVLKKACARFPDLQHDLDMLDALRAKPLTPAGLTQAVIEHY QPRLEANYPDDYPRRQHGLEQLVQIAASYNDVDLMLSDLCLEDPATDKGEDISAVTLSTVHSAKGLEWSAVLLIDLVEDR FPSRHALNKAEDFEEERRLMYVACTRARDYLALFVPATIYDRSGGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQD ARPVTVSAARTSGPASGGGRQAEQGGGALGNGGRPASGYCTHKIFGRGKIIQHVPPDKYRVNFPGFGLKVIMAQYLTLE
Sequences:
>Translated_719_residues MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFTRKAAQEMQHRAAQLLGQSAG MVGGVQGGTFHAFAYSILRMHKPQGYEGDLSVMDSADAAGALKHCKDTLGLGKGDRSFPKTQTVMGLLSKARNKELTVED VLRREAFHLASYAGDLTRISDTYRAFKRRHALMDYDDLLFELERLLQSDADLLAYYRDRFRYIMVDEFQDTNLVQARLVR LLGSGHNNVMAVGDDAQSIYAFRGANVQNILDFPDMFPGTRIIKLEENYRSVQPVLDLTNAILDDAPQAFRKKLFTRREG GPTPHVLRPLSDLTQASMVTSKITELLRTYPPDEIAVLFRAGYQSYHVEMQLGKLGVKFKKYGGVRYSDAAHVKDVLSYI RLVVNPLDLPAFQRMASLVKGIGAKTCLKLYDAAQKADRSVLKKACARFPDLQHDLDMLDALRAKPLTPAGLTQAVIEHY QPRLEANYPDDYPRRQHGLEQLVQIAASYNDVDLMLSDLCLEDPATDKGEDISAVTLSTVHSAKGLEWSAVLLIDLVEDR FPSRHALNKAEDFEEERRLMYVACTRARDYLALFVPATIYDRSGGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQD ARPVTVSAARTSGPASGGGRQAEQGGGALGNGGRPASGYCTHKIFGRGKIIQHVPPDKYRVNFPGFGLKVIMAQYLTLE >Mature_719_residues MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFTRKAAQEMQHRAAQLLGQSAG MVGGVQGGTFHAFAYSILRMHKPQGYEGDLSVMDSADAAGALKHCKDTLGLGKGDRSFPKTQTVMGLLSKARNKELTVED VLRREAFHLASYAGDLTRISDTYRAFKRRHALMDYDDLLFELERLLQSDADLLAYYRDRFRYIMVDEFQDTNLVQARLVR LLGSGHNNVMAVGDDAQSIYAFRGANVQNILDFPDMFPGTRIIKLEENYRSVQPVLDLTNAILDDAPQAFRKKLFTRREG GPTPHVLRPLSDLTQASMVTSKITELLRTYPPDEIAVLFRAGYQSYHVEMQLGKLGVKFKKYGGVRYSDAAHVKDVLSYI RLVVNPLDLPAFQRMASLVKGIGAKTCLKLYDAAQKADRSVLKKACARFPDLQHDLDMLDALRAKPLTPAGLTQAVIEHY QPRLEANYPDDYPRRQHGLEQLVQIAASYNDVDLMLSDLCLEDPATDKGEDISAVTLSTVHSAKGLEWSAVLLIDLVEDR FPSRHALNKAEDFEEERRLMYVACTRARDYLALFVPATIYDRSGGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQD ARPVTVSAARTSGPASGGGRQAEQGGGALGNGGRPASGYCTHKIFGRGKIIQHVPPDKYRVNFPGFGLKVIMAQYLTLE
Specific function: Essential helicase [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=757, Percent_Identity=33.0250990752972, Blast_Score=306, Evalue=3e-84, Organism=Escherichia coli, GI48994965, Length=661, Percent_Identity=29.6520423600605, Blast_Score=232, Evalue=7e-62, Organism=Escherichia coli, GI1789183, Length=142, Percent_Identity=32.3943661971831, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322369, Length=443, Percent_Identity=25.9593679458239, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6324477, Length=398, Percent_Identity=23.3668341708543, Blast_Score=91, Evalue=1e-18,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 79777; Mature: 79777
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFT CCCCHHHCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC RKAAQEMQHRAAQLLGQSAGMVGGVQGGTFHAFAYSILRMHKPQGYEGDLSVMDSADAAG HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH ALKHCKDTLGLGKGDRSFPKTQTVMGLLSKARNKELTVEDVLRREAFHLASYAGDLTRIS HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHH DTYRAFKRRHALMDYDDLLFELERLLQSDADLLAYYRDRFRYIMVDEFQDTNLVQARLVR HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH LLGSGHNNVMAVGDDAQSIYAFRGANVQNILDFPDMFPGTRIIKLEENYRSVQPVLDLTN HHCCCCCCEEEECCCHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH AILDDAPQAFRKKLFTRREGGPTPHVLRPLSDLTQASMVTSKITELLRTYPPDEIAVLFR HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH AGYQSYHVEMQLGKLGVKFKKYGGVRYSDAAHVKDVLSYIRLVVNPLDLPAFQRMASLVK HCCCCEEEEEEECHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GIGAKTCLKLYDAAQKADRSVLKKACARFPDLQHDLDMLDALRAKPLTPAGLTQAVIEHY CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHC QPRLEANYPDDYPRRQHGLEQLVQIAASYNDVDLMLSDLCLEDPATDKGEDISAVTLSTV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEHHHH HSAKGLEWSAVLLIDLVEDRFPSRHALNKAEDFEEERRLMYVACTRARDYLALFVPATIY HHCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHEEEEEECCCCCEEEEEECHHEE DRSGGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQDARPVTVSAARTSGPASGGGR ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCCCCCCC QAEQGGGALGNGGRPASGYCTHKIFGRGKIIQHVPPDKYRVNFPGFGLKVIMAQYLTLE CCHHCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCEEECCCCCHHHHHHHHHHCCC >Mature Secondary Structure MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFT CCCCHHHCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC RKAAQEMQHRAAQLLGQSAGMVGGVQGGTFHAFAYSILRMHKPQGYEGDLSVMDSADAAG HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH ALKHCKDTLGLGKGDRSFPKTQTVMGLLSKARNKELTVEDVLRREAFHLASYAGDLTRIS HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHH DTYRAFKRRHALMDYDDLLFELERLLQSDADLLAYYRDRFRYIMVDEFQDTNLVQARLVR HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH LLGSGHNNVMAVGDDAQSIYAFRGANVQNILDFPDMFPGTRIIKLEENYRSVQPVLDLTN HHCCCCCCEEEECCCHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH AILDDAPQAFRKKLFTRREGGPTPHVLRPLSDLTQASMVTSKITELLRTYPPDEIAVLFR HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH AGYQSYHVEMQLGKLGVKFKKYGGVRYSDAAHVKDVLSYIRLVVNPLDLPAFQRMASLVK HCCCCEEEEEEECHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GIGAKTCLKLYDAAQKADRSVLKKACARFPDLQHDLDMLDALRAKPLTPAGLTQAVIEHY CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHC QPRLEANYPDDYPRRQHGLEQLVQIAASYNDVDLMLSDLCLEDPATDKGEDISAVTLSTV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEHHHH HSAKGLEWSAVLLIDLVEDRFPSRHALNKAEDFEEERRLMYVACTRARDYLALFVPATIY HHCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHEEEEEECCCCCEEEEEECHHEE DRSGGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQDARPVTVSAARTSGPASGGGR ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCCCCCCC QAEQGGGALGNGGRPASGYCTHKIFGRGKIIQHVPPDKYRVNFPGFGLKVIMAQYLTLE CCHHCCCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCEEECCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA