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The map label for this gene is pduA [H]

Identifier: 78358318

GI number: 78358318

Start: 3268223

End: 3268507

Strand: Reverse

Name: pduA [H]

Synonym: Dde_3278

Alternate gene names: 78358318

Gene position: 3268507-3268223 (Counterclockwise)

Preceding gene: 78358319

Following gene: 78358316

Centisome position: 87.62

GC content: 61.05

Gene sequence:

>285_bases
ATGTCCTCTTCCAACGCACTCGGTATGATTGAAACCAGAGGTCTTGTGGGCGCAGTAGAAGCAGCTGACGCCATGGTGAA
GGCCGCAAACGTCACCCTGATCGGCCGTTCGCAGGTGGGCGGTGGTCTGGTGACCGTGATGGTCCGCGGCGACGTGGGCG
CAGTGAAGGCTGCAACCGACGCAGGCGCAGCCGCCGCCAACAATGTGGGCGAGCTGGTAAGCGTGCACGTGATTCCCCGT
CCCCACAGCGAAGTGGAAATGATTCTTCCCAAGGTGGAAGGCTAA

Upstream 100 bases:

>100_bases
GGCCATCACGCAGCTGATCGTGGAACAACTGAAAAAAATGGCCTAAGCCCCGGCTGTGGCTTGTAACAATATATAAAAAC
AGACTTTTAAGGAGAATAGC

Downstream 100 bases:

>100_bases
CCATTCCGGCTCACGGGTGCCCCTGCGGAGATTCTGTCCGCCGGCGGTAATCCCGTGACGTTACCGGGCTGCGGAGGAGG
CATCTCCTCCGCGCCCGGCT

Product: microcompartment protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MSSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAATDAGAAAANNVGELVSVHVIPR
PHSEVEMILPKVEG

Sequences:

>Translated_94_residues
MSSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAATDAGAAAANNVGELVSVHVIPR
PHSEVEMILPKVEG
>Mature_93_residues
SSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAATDAGAAAANNVGELVSVHVIPRP
HSEVEMILPKVEG

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=86, Percent_Identity=72.0930232558139, Blast_Score=107, Evalue=1e-25,
Organism=Escherichia coli, GI87082105, Length=84, Percent_Identity=45.2380952380952, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 9349; Mature: 9218

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS01139 BACT_MICROCOMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAATD
CCCCCCCEEEECCCCEEEHHHHHHHEEECEEEEEECCCCCCEEEEEEEECCCCEEEECCC
AGAAAANNVGELVSVHVIPRPHSEVEMILPKVEG
CCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCC
>Mature Secondary Structure 
SSSNALGMIETRGLVGAVEAADAMVKAANVTLIGRSQVGGGLVTVMVRGDVGAVKAATD
CCCCCCEEEECCCCEEEHHHHHHHEEECEEEEEECCCCCCEEEEEEEECCCCEEEECCC
AGAAAANNVGELVSVHVIPRPHSEVEMILPKVEG
CCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]