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The map label for this gene is yebA [H]

Identifier: 78358194

GI number: 78358194

Start: 3140501

End: 3141667

Strand: Reverse

Name: yebA [H]

Synonym: Dde_3154

Alternate gene names: 78358194

Gene position: 3141667-3140501 (Counterclockwise)

Preceding gene: 78358195

Following gene: 78358193

Centisome position: 84.22

GC content: 61.78

Gene sequence:

>1167_bases
ATGAGCGGCCCTTTGTACGATTCCGGCATGGCATCTTCCGCCCTTGAAGGGCAGGAGCTTGTGCGGCGCAAGCGCGAGAT
GGACGCGCTGCGTCAGCGGCTGGGCGACAGCAAGTCGCGCGAGCAGCGTCTGCGCGAATCGTGCGAAGGCTTTGAATCAC
TGTTCATTCAGAAACTGTGGCAGCAGATGCGCGCGACCGTGCCCAAAGAAGGTTACCTGCACAGCCGCGACGAAGAAATG
TACCAGTCCATGTTTGATCAGGAGCTGGCCAAGAAAATGGCTTCGGCAGGCGGCATAGGGCTGGCAGATATGCTGTATGA
ACAGCTGCAGGGAAGGCTGGAGGATGCCAGCCGCACCACATCGCCCGGCGCCATGACAGGTGCCGCGGCAGTACGCCCGC
TCTCTCTCAGGGACGGTGCCGCAGCGGTGCCGGAAGATGCCGCGGCGTTACCGGAAGATGCCGCGGCCGGTGATGCGGTT
CCGCAGGACGGAGACGAGGCCATGTACACGCCGCTGGAACAGCCGCAGGCCGGTGCGGGCAAATCTGTCTTGGCGGATTC
TGCTCCGGCGGAGCATCCGCCTTTGTCATCGGTTCCTCCCGCGTTTTCTTCTGAAGACAAAAAGATATTTACACAGGTGG
AGGCGCTTGCCCGGCGCATACGGCAGAATGCCGCACCGCAGGATGCCCCGCAGCAGGTTGAAGCCGCGGGCGGCATGGGC
GGCCCCGCACAAAGCGATGCCGCTCCCGTCTCGCTGCACTGGCCGCTGCCGGGCAGAATATCGTCCGGTTTCGGCTGGCG
TCCGGACCCGTTTACAGGTGAACGGGAATGGCACGCGGGGCTTGATATCGCCGGAGAAGAAGGCGAACCCGTGGCAGCCT
GCTGGGACGGAAAGGTGGTTTTTGCCGGAGAAAAGGGAGACTACGGCAAACTGGTGGTGCTGGAACACGCCGGCGGGTGG
CGCAGTTATTACGGTCACAACAGTGAACTGAATGTGGAAGTGGGGGATGTTGTCACGGCTGGCAGGAAAATTGCTGAAGT
AGGTGACACAGGCCGCTCCACAGGCCCTCATCTGCACTTCGAACTGCGTCAGGGTGAACTTGCATGGAACCCCGAGCAGA
TCAGAAACCGGCTGATGGCGGGGCTTTCCATAGGTAAACGCGGCTGA

Upstream 100 bases:

>100_bases
GGCCTGAATTCCATAGGCGCCACACCGCGCGATCTTATTTCCATACTGCGCACGCTCAAAGCGGCGGGCGCGCTGCACGC
GGAGCTGGAGGTCATCTAGC

Downstream 100 bases:

>100_bases
CGGAGGTAAAGGATATGACCGGTTATCTGCTCGGCAATCTTGTCCGCCAGAAAGGCGCGCTGCACTATCTTGAAACACTG
CTTGAGGAAGAGTTTTCCCA

Product: membrane proteins, metalloendopeptidase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSGPLYDSGMASSALEGQELVRRKREMDALRQRLGDSKSREQRLRESCEGFESLFIQKLWQQMRATVPKEGYLHSRDEEM
YQSMFDQELAKKMASAGGIGLADMLYEQLQGRLEDASRTTSPGAMTGAAAVRPLSLRDGAAAVPEDAAALPEDAAAGDAV
PQDGDEAMYTPLEQPQAGAGKSVLADSAPAEHPPLSSVPPAFSSEDKKIFTQVEALARRIRQNAAPQDAPQQVEAAGGMG
GPAQSDAAPVSLHWPLPGRISSGFGWRPDPFTGEREWHAGLDIAGEEGEPVAACWDGKVVFAGEKGDYGKLVVLEHAGGW
RSYYGHNSELNVEVGDVVTAGRKIAEVGDTGRSTGPHLHFELRQGELAWNPEQIRNRLMAGLSIGKRG

Sequences:

>Translated_388_residues
MSGPLYDSGMASSALEGQELVRRKREMDALRQRLGDSKSREQRLRESCEGFESLFIQKLWQQMRATVPKEGYLHSRDEEM
YQSMFDQELAKKMASAGGIGLADMLYEQLQGRLEDASRTTSPGAMTGAAAVRPLSLRDGAAAVPEDAAALPEDAAAGDAV
PQDGDEAMYTPLEQPQAGAGKSVLADSAPAEHPPLSSVPPAFSSEDKKIFTQVEALARRIRQNAAPQDAPQQVEAAGGMG
GPAQSDAAPVSLHWPLPGRISSGFGWRPDPFTGEREWHAGLDIAGEEGEPVAACWDGKVVFAGEKGDYGKLVVLEHAGGW
RSYYGHNSELNVEVGDVVTAGRKIAEVGDTGRSTGPHLHFELRQGELAWNPEQIRNRLMAGLSIGKRG
>Mature_387_residues
SGPLYDSGMASSALEGQELVRRKREMDALRQRLGDSKSREQRLRESCEGFESLFIQKLWQQMRATVPKEGYLHSRDEEMY
QSMFDQELAKKMASAGGIGLADMLYEQLQGRLEDASRTTSPGAMTGAAAVRPLSLRDGAAAVPEDAAALPEDAAAGDAVP
QDGDEAMYTPLEQPQAGAGKSVLADSAPAEHPPLSSVPPAFSSEDKKIFTQVEALARRIRQNAAPQDAPQQVEAAGGMGG
PAQSDAAPVSLHWPLPGRISSGFGWRPDPFTGEREWHAGLDIAGEEGEPVAACWDGKVVFAGEKGDYGKLVVLEHAGGWR
SYYGHNSELNVEVGDVVTAGRKIAEVGDTGRSTGPHLHFELRQGELAWNPEQIRNRLMAGLSIGKRG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=42.1052631578947, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87082297, Length=137, Percent_Identity=37.2262773722628, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=37.5, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082174, Length=119, Percent_Identity=31.9327731092437, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 41703; Mature: 41572

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPLYDSGMASSALEGQELVRRKREMDALRQRLGDSKSREQRLRESCEGFESLFIQKLW
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
QQMRATVPKEGYLHSRDEEMYQSMFDQELAKKMASAGGIGLADMLYEQLQGRLEDASRTT
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SPGAMTGAAAVRPLSLRDGAAAVPEDAAALPEDAAAGDAVPQDGDEAMYTPLEQPQAGAG
CCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KSVLADSAPAEHPPLSSVPPAFSSEDKKIFTQVEALARRIRQNAAPQDAPQQVEAAGGMG
CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
GPAQSDAAPVSLHWPLPGRISSGFGWRPDPFTGEREWHAGLDIAGEEGEPVAACWDGKVV
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEE
FAGEKGDYGKLVVLEHAGGWRSYYGHNSELNVEVGDVVTAGRKIAEVGDTGRSTGPHLHF
EECCCCCCCCEEEEECCCCHHHHCCCCCEEEEEHHHHHHHCHHHHHHCCCCCCCCCEEEE
ELRQGELAWNPEQIRNRLMAGLSIGKRG
EEECCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGPLYDSGMASSALEGQELVRRKREMDALRQRLGDSKSREQRLRESCEGFESLFIQKLW
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
QQMRATVPKEGYLHSRDEEMYQSMFDQELAKKMASAGGIGLADMLYEQLQGRLEDASRTT
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SPGAMTGAAAVRPLSLRDGAAAVPEDAAALPEDAAAGDAVPQDGDEAMYTPLEQPQAGAG
CCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KSVLADSAPAEHPPLSSVPPAFSSEDKKIFTQVEALARRIRQNAAPQDAPQQVEAAGGMG
CHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
GPAQSDAAPVSLHWPLPGRISSGFGWRPDPFTGEREWHAGLDIAGEEGEPVAACWDGKVV
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEE
FAGEKGDYGKLVVLEHAGGWRSYYGHNSELNVEVGDVVTAGRKIAEVGDTGRSTGPHLHF
EECCCCCCCCEEEEECCCCHHHHCCCCCEEEEEHHHHHHHCHHHHHHCCCCCCCCCEEEE
ELRQGELAWNPEQIRNRLMAGLSIGKRG
EEECCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]