Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
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Accession | NC_007519 |
Length | 3,730,232 |
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The map label for this gene is intD [C]
Identifier: 78355667
GI number: 78355667
Start: 639695
End: 640540
Strand: Direct
Name: intD [C]
Synonym: Dde_0620
Alternate gene names: 78355667
Gene position: 639695-640540 (Clockwise)
Preceding gene: 78355666
Following gene: 78355669
Centisome position: 17.15
GC content: 50.24
Gene sequence:
>846_bases ATGACTGTCGGTAAGTGGGCAGAATACTATGTTGATCACGCCGAACAGACTTGGCCTCACAAGACGTTTGACGAGAAGCG TAGAGCGTTCAGACGTTTTTTTGATACCAAAATATGCAAGCCTGGGGACCCTATCACCACAGTCTCGGTGGAAAAGGCTT CCAAGGTGCTGGCGGTATTAAAGGAACACCACTCGGGCAACAACCTGAATAGGATGCGGAAAAATCTGATTGCAGCGTGG AACTGGGGAATAAAAAATCACAAGATTCCTGCCCAAAACCCCTTCGCTTTGACAGACAGATCTAGCGAGATCATCAAGTT GCGATATGTCCCTCCGATGGAGGACTTGAAGGCGGTTGTTGATGTGGCTGCAGGAGAACAGAGGCTGATGCTTTTGACTG CGTTTTATACTGCAGCCCGGAAGTGTGAACTCTTTCGGCTGAGGTGGACGGATGTAGACTTCGCATCGAACAAGATCGGT CTCTGGACGAAAAAACGTAAGGGGGGAAACTTGGAGTTGGATCTTATGCCAATGGCAAAACCCTTACGTTCACTGCTCGA AGAGCACCACCGTGGGGCAGAGTCTGAACATGTCTTTGATCAGTCTCCACATTCGCAGAACTCGAACAACCGCTGGTTGA AAGAGTTATGCAAGGAGGCTGGGGTCAAGGCTTTTGGATTTCACGGCATCAGGCATTTGGCGGCAAGCTATGGCATTGAG TCCGGCGCTTCCATTGTGGATGTGCAGGAGTTGCTGCGGCATAAGTCTGCAAATGTGACTGCCCGGTATATCAGACGATT GAAGAAGGGCAACCGTGCGGTGGAAGCTTTGGAAATGGCCCTGTAG
Upstream 100 bases:
>100_bases TGACAAGAAAAAAGATGCAATAGGATGGGAGCGTGATACGCGCATCGCGCTCGAACATGCTGAAGCACAGAAGCGTTCGT TGCGGGGCATCGGGGAAGTC
Downstream 100 bases:
>100_bases GTAACGCGAAAGTGTTTTGGGAAAAATTGACACATCGGTCTGACACATGGCGACAGAGCAAAAGAAAAAAGCACTTATGC TATCGCATAAGTGCTTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: Site-Specific Recombinase; Phage Integrase Family Protein; Integrase; Site Specific Recombinase
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTVGKWAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVLKEHHSGNNLNRMRKNLIAAW NWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVVDVAAGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIG LWTKKRKGGNLELDLMPMAKPLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIE SGASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEMAL
Sequences:
>Translated_281_residues MTVGKWAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVLKEHHSGNNLNRMRKNLIAAW NWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVVDVAAGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIG LWTKKRKGGNLELDLMPMAKPLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIE SGASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEMAL >Mature_280_residues TVGKWAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVLKEHHSGNNLNRMRKNLIAAWN WGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVVDVAAGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGL WTKKRKGGNLELDLMPMAKPLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIES GASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEMAL
Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32198; Mature: 32067
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVGKWAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVL CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH KEHHSGNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVV HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCHHHHHHHH DVAAGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGLWTKKRKGGNLELDLMPMAK HHHCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCEEECCCCCCEEEEEHHHHH PLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIE HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC SGASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEMAL CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure TVGKWAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVL CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH KEHHSGNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVV HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCHHHHHHHH DVAAGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGLWTKKRKGGNLELDLMPMAK HHHCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCEEECCCCCCEEEEEHHHHH PLRSLLEEHHRGAESEHVFDQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIE HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC SGASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEMAL CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA