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The map label for this gene is hoxY [H]

Identifier: 78222330

GI number: 78222330

Start: 1234934

End: 1235476

Strand: Direct

Name: hoxY [H]

Synonym: Gmet_1112

Alternate gene names: 78222330

Gene position: 1234934-1235476 (Clockwise)

Preceding gene: 78222329

Following gene: 78222331

Centisome position: 30.89

GC content: 65.38

Gene sequence:

>543_bases
ATGGGTAGGCGGGGAAGGATCCGGTTCGCCACGGTCTGGCTCGGTGGCTGCTCGGGGTGCCACATGAGCTTTCTCGATCT
GGACGAGCGGCTCGTGGAGCTGGCCGGCCTGGCCGACATGGTCTACGGCCCTTTTATGGATGCGAAGGAATTCCCCCGGA
AGGTGGACGTGACCCTCGTGGAGGGGGCAGTCACTAATCGGGCCAACCTGGCCATGGCCTTGATGCTGCGGGAACGGAGC
CGCATTGTCGTGAGCCTGGGCGACTGCGCCGTGACTGGCAACGTGACGAGCCTGCGGAACCAACTGCCGGTGGCCGACGT
CCTGGCAACCTTCCTGAGCTGTGGGGAAGGGAGCGTTCCCGCCATGGACTACAATGCAGTGCCGGAGCTTCTCCCCCGGG
CGCTCCCCCTCCATCAGGTGATCGCGGTGGACGGGTTTCTCCCCGGCTGCCCCCCGGACCCGGAGAGGATCTGGACCGCC
ATCGGGTGCCTCCTGCGGGGGGAACCGGTTCATCTCGAATCAGATATGCTCACCTTCGGATAG

Upstream 100 bases:

>100_bases
AGGGGCAGCGGTGGGCGAGATGGTGAAGGATGCCGGCATGCTCACGCGGGTTATCGAGGGACGGGACAAGAAGGGATGGC
AGGAATGACGGGGGGCGGCA

Downstream 100 bases:

>100_bases
GATTGCCATGTCACGCACCATTACCATAGACCCCGTCACCCGCATCGAGGGGCATGCCACCATCACCATCCGGCTCGATG
ATGCCGGCTCCGTGGCGGAC

Product: NADH ubiquinone oxidoreductase, 20 kDa subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MGRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEFPRKVDVTLVEGAVTNRANLAMALMLRERS
RIVVSLGDCAVTGNVTSLRNQLPVADVLATFLSCGEGSVPAMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTA
IGCLLRGEPVHLESDMLTFG

Sequences:

>Translated_180_residues
MGRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEFPRKVDVTLVEGAVTNRANLAMALMLRERS
RIVVSLGDCAVTGNVTSLRNQLPVADVLATFLSCGEGSVPAMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTA
IGCLLRGEPVHLESDMLTFG
>Mature_179_residues
GRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEFPRKVDVTLVEGAVTNRANLAMALMLRERSR
IVVSLGDCAVTGNVTSLRNQLPVADVLATFLSCGEGSVPAMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTAI
GCLLRGEPVHLESDMLTFG

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.1.2 [H]

Molecular weight: Translated: 19498; Mature: 19367

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEFPRKVDVTLV
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEECEEEE
EGAVTNRANLAMALMLRERSRIVVSLGDCAVTGNVTSLRNQLPVADVLATFLSCGEGSVP
CCCCCCCHHHHHHHHHHHCCEEEEEECCEEEECCHHHHHHCCCHHHHHHHHHHCCCCCCC
AMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTAIGCLLRGEPVHLESDMLTFG
CCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCEECC
>Mature Secondary Structure 
GRRGRIRFATVWLGGCSGCHMSFLDLDERLVELAGLADMVYGPFMDAKEFPRKVDVTLV
CCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEECEEEE
EGAVTNRANLAMALMLRERSRIVVSLGDCAVTGNVTSLRNQLPVADVLATFLSCGEGSVP
CCCCCCCHHHHHHHHHHHCCEEEEEECCEEEECCHHHHHHCCCHHHHHHHHHHCCCCCCC
AMDYNAVPELLPRALPLHQVIAVDGFLPGCPPDPERIWTAIGCLLRGEPVHLESDMLTFG
CCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982 [H]