| Definition | Chlorobium chlorochromatii CaD3 chromosome, complete genome. |
|---|---|
| Accession | NC_007514 |
| Length | 2,572,079 |
Click here to switch to the map view.
The map label for this gene is hypF2 [H]
Identifier: 78188511
GI number: 78188511
Start: 635481
End: 637730
Strand: Reverse
Name: hypF2 [H]
Synonym: Cag_0533
Alternate gene names: 78188511
Gene position: 637730-635481 (Counterclockwise)
Preceding gene: 78188512
Following gene: 78188510
Centisome position: 24.79
GC content: 49.47
Gene sequence:
>2250_bases ATGCAGCGCCAGCGTTTATTAATTAACGGGATTGTGCAGGGCGTTGGCTTCCGTCCCTTTGTTTATCGTTTAGCTATTGA GCATGAGTTAACGGGCTTTATTCGCAACACAGCGTTAGGTGTGCTGATTGAAGTGCAAGGAAGTGCTGATCGGCTCGATA GCTTTTGCACCGCTTTGCACCATCAGCCACCACCACTTGCTCGCATTGCATCGTTTGAGATGCATTTCATTCCATGTGTT TTTGAGGAAGCGACTTTTGTTATTACCGATTCCCATTCGGGTGGCGATGTAGAGACGCTCATTCCGCCCGACATTGCTTT GTGCAGCGATTGCCGTCGAGAATTGTACGATCCCACCAATCGCCGTTACCGTTATCCCTTCATCAATTGTACCAATTGTG GTCCTCGCTACACCATTGTTGCCCATCTGCCATACGATCGCCCAACAACTTCCATGCAGAGCTTTGCCATATGCCCTGAG TGCGAGCAGGAGTATCACAATCCGCTTGATCGCCGCTTTCATGCCGAGCCTACGTGCTGTCCGATTTGTGGTCCTTCACT TTCACTCCTTGATGCCGATGGCAATGCCATTGCAGATGATCCGTTAGAAGAAACAGCATCGTTATTACATCACGGAGCAA TTGTAGCCATTAAAGGTATTGGTGGATTTCATGTTGCTGTTGATGCGCTGAATGATGATGCCGTCTTGCGACTTCGTAAA AGCAAAGGACGTGAAGCAAAACCATTTGCCGTGATGATGCGTGATGTAGCCGTTGTTGAACGTTATTGCATGGTGAACGA TGATGAACGGCAAGCACTGCTTTCAGCGGAAGCTCCCATTGTGTTGCTGAAAAAACTTGCCAACACTCAGCTTGCGGCTT CTGTTGCGCCTGATAACGATCGGCTTGGCGTGATGCTACCCTATACGCCGTTGCATCTGCTGCTGTTTGATAGAGTGCCA GAGGTGCTTGTGATGACCAGCGCCAATATGAGCGAAGAGCCAATGGTGCACGAGAATAGTGAAGCGTTGCAAAAACTGCA AGGTATAGCCGATGCCTTTCTCATGCACAATCGCCCGATCTATCTCAAGTGTGATGATTCAGTAACCATCCATCTTGCTG GTCAGCTACGTCAGTTGCGGCGAAGTCGTGGCTATGTGCCTGCACCGCTTCTGCTGCGCCACAGCGGAGCAACGCTACTT GCTACAGGTGGAGAATTAAAAAATAGCGTAACGCTGTTAAAAGCCCATCACGCCATTATGAGCCAGCACATTGGCGATGT AAAAAATTTTGATGCCTACTGCCATTTTGAACAGGTTGTGGCTCATCTGCAACATCTTTTTCAAGCAACGCCTGAGCTAA TTGTGCACGATCTCCATCCAGCCTATCTCACAACACAATGGGCAGAAAAGCAAGCAATTCCAACGCTTGGCGTGCAACAT CACCATGCACACCTTGCCGCCTGCCTTGCTGAAAATCAGGTGGATGAACCAGCTATTGGAGTGATTCTTGACGGCACCGG CTATGGCACCGATGGCACGGTGTGGGGCGGTGAAGTGCTGATTGGCGATGTTGCAAATTTTGAGCGCTTTGCATCGCTTG AGCTGATGCCGCTTGCGGGAGGTGAAGCTGCAATTCGCCAGCCGTGGCGTGCCGCCGTTGGCTATATCTACAAAAGTTGC GGAAGTTTACCGGACTTGCCGTTTTTGCAAAATCGTGATATAGCGCCGATTATGGAGCTGCTCGAACGGCAACTGCACCT TGTTGAAACATCAAGCTGCGGGCGCCTCTTTGACGTGGTGGCGGCACTCTGTAACCTACGTGGAACCATTACCTACGAAG GTGAAGCCGCTATTGCACTTATGCACGCTGCAAATGGAACGGTGGGCAGGCAACCATTTCCGTATGACCTTTGCTATCAG CTCAACCGTTGGATTATTGGCATTGCGCCCATGATTCGCTCAATTGTTAATTCGTTGCTACACGGTGCATCAGCTCAAGA AGTTAGCCAACGCTTTCATGGTACGCTTGTGCATTGCTTTTGCGAAGTTGTTCAAAAAGCCTCAGAAGCAACAGGGCTAA AAATCGTGGCGTTAAGCGGTGGCGTTTTTCAAAATGAGCTGCTGTTTACAGCGCTTGTTCACGCTCTTGAACAAGCAGGA TTTACCGTTTTAACGCATTCGCGTGTACCAACGAATGATGGTGGATTATCGCTTGGGCAGGCAATTATTGGGAGAAGGTT TCTTGCTTGA
Upstream 100 bases:
>100_bases AATGGTTTGAAGTGTCGGCAAAAAGTGGTGATGGGCTTGCGGCGTTGCAGGAATGGCTTGAGCATCAGGTTGTGCTCCAT TGAACAGGTTTCTGCGTCAG
Downstream 100 bases:
>100_bases GTAAAGTTTACGGCTAAAACTTAATACTTTGATTATTTGCACGACCCATAACAACGCCATAAACTCGTACCTCGTCAAGC AGCAATCCTTCGTTGCTCTG
Product: hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MQRQRLLINGIVQGVGFRPFVYRLAIEHELTGFIRNTALGVLIEVQGSADRLDSFCTALHHQPPPLARIASFEMHFIPCV FEEATFVITDSHSGGDVETLIPPDIALCSDCRRELYDPTNRRYRYPFINCTNCGPRYTIVAHLPYDRPTTSMQSFAICPE CEQEYHNPLDRRFHAEPTCCPICGPSLSLLDADGNAIADDPLEETASLLHHGAIVAIKGIGGFHVAVDALNDDAVLRLRK SKGREAKPFAVMMRDVAVVERYCMVNDDERQALLSAEAPIVLLKKLANTQLAASVAPDNDRLGVMLPYTPLHLLLFDRVP EVLVMTSANMSEEPMVHENSEALQKLQGIADAFLMHNRPIYLKCDDSVTIHLAGQLRQLRRSRGYVPAPLLLRHSGATLL ATGGELKNSVTLLKAHHAIMSQHIGDVKNFDAYCHFEQVVAHLQHLFQATPELIVHDLHPAYLTTQWAEKQAIPTLGVQH HHAHLAACLAENQVDEPAIGVILDGTGYGTDGTVWGGEVLIGDVANFERFASLELMPLAGGEAAIRQPWRAAVGYIYKSC GSLPDLPFLQNRDIAPIMELLERQLHLVETSSCGRLFDVVAALCNLRGTITYEGEAAIALMHAANGTVGRQPFPYDLCYQ LNRWIIGIAPMIRSIVNSLLHGASAQEVSQRFHGTLVHCFCEVVQKASEATGLKIVALSGGVFQNELLFTALVHALEQAG FTVLTHSRVPTNDGGLSLGQAIIGRRFLA
Sequences:
>Translated_749_residues MQRQRLLINGIVQGVGFRPFVYRLAIEHELTGFIRNTALGVLIEVQGSADRLDSFCTALHHQPPPLARIASFEMHFIPCV FEEATFVITDSHSGGDVETLIPPDIALCSDCRRELYDPTNRRYRYPFINCTNCGPRYTIVAHLPYDRPTTSMQSFAICPE CEQEYHNPLDRRFHAEPTCCPICGPSLSLLDADGNAIADDPLEETASLLHHGAIVAIKGIGGFHVAVDALNDDAVLRLRK SKGREAKPFAVMMRDVAVVERYCMVNDDERQALLSAEAPIVLLKKLANTQLAASVAPDNDRLGVMLPYTPLHLLLFDRVP EVLVMTSANMSEEPMVHENSEALQKLQGIADAFLMHNRPIYLKCDDSVTIHLAGQLRQLRRSRGYVPAPLLLRHSGATLL ATGGELKNSVTLLKAHHAIMSQHIGDVKNFDAYCHFEQVVAHLQHLFQATPELIVHDLHPAYLTTQWAEKQAIPTLGVQH HHAHLAACLAENQVDEPAIGVILDGTGYGTDGTVWGGEVLIGDVANFERFASLELMPLAGGEAAIRQPWRAAVGYIYKSC GSLPDLPFLQNRDIAPIMELLERQLHLVETSSCGRLFDVVAALCNLRGTITYEGEAAIALMHAANGTVGRQPFPYDLCYQ LNRWIIGIAPMIRSIVNSLLHGASAQEVSQRFHGTLVHCFCEVVQKASEATGLKIVALSGGVFQNELLFTALVHALEQAG FTVLTHSRVPTNDGGLSLGQAIIGRRFLA >Mature_749_residues MQRQRLLINGIVQGVGFRPFVYRLAIEHELTGFIRNTALGVLIEVQGSADRLDSFCTALHHQPPPLARIASFEMHFIPCV FEEATFVITDSHSGGDVETLIPPDIALCSDCRRELYDPTNRRYRYPFINCTNCGPRYTIVAHLPYDRPTTSMQSFAICPE CEQEYHNPLDRRFHAEPTCCPICGPSLSLLDADGNAIADDPLEETASLLHHGAIVAIKGIGGFHVAVDALNDDAVLRLRK SKGREAKPFAVMMRDVAVVERYCMVNDDERQALLSAEAPIVLLKKLANTQLAASVAPDNDRLGVMLPYTPLHLLLFDRVP EVLVMTSANMSEEPMVHENSEALQKLQGIADAFLMHNRPIYLKCDDSVTIHLAGQLRQLRRSRGYVPAPLLLRHSGATLL ATGGELKNSVTLLKAHHAIMSQHIGDVKNFDAYCHFEQVVAHLQHLFQATPELIVHDLHPAYLTTQWAEKQAIPTLGVQH HHAHLAACLAENQVDEPAIGVILDGTGYGTDGTVWGGEVLIGDVANFERFASLELMPLAGGEAAIRQPWRAAVGYIYKSC GSLPDLPFLQNRDIAPIMELLERQLHLVETSSCGRLFDVVAALCNLRGTITYEGEAAIALMHAANGTVGRQPFPYDLCYQ LNRWIIGIAPMIRSIVNSLLHGASAQEVSQRFHGTLVHCFCEVVQKASEATGLKIVALSGGVFQNELLFTALVHALEQAG FTVLTHSRVPTNDGGLSLGQAIIGRRFLA
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=766, Percent_Identity=40.2088772845953, Blast_Score=464, Evalue=1e-131,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 82327; Mature: 82327
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRQRLLINGIVQGVGFRPFVYRLAIEHELTGFIRNTALGVLIEVQGSADRLDSFCTALH CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHC HQPPPLARIASFEMHFIPCVFEEATFVITDSHSGGDVETLIPPDIALCSDCRRELYDPTN CCCCCHHHHHCCHHEEEEEEECCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHCCCCC RRYRYPFINCTNCGPRYTIVAHLPYDRPTTSMQSFAICPECEQEYHNPLDRRFHAEPTCC CEEECCEEEECCCCCCEEEEEECCCCCCCCCHHHEECCCHHHHHHCCHHHHCCCCCCCCC PICGPSLSLLDADGNAIADDPLEETASLLHHGAIVAIKGIGGFHVAVDALNDDAVLRLRK CCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCHHEEEHH SKGREAKPFAVMMRDVAVVERYCMVNDDERQALLSAEAPIVLLKKLANTQLAASVAPDND HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCC RLGVMLPYTPLHLLLFDRVPEVLVMTSANMSEEPMVHENSEALQKLQGIADAFLMHNRPI CEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE YLKCDDSVTIHLAGQLRQLRRSRGYVPAPLLLRHSGATLLATGGELKNSVTLLKAHHAIM EEEECCCEEEEEHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHH SQHIGDVKNFDAYCHFEQVVAHLQHLFQATPELIVHDLHPAYLTTQWAEKQAIPTLGVQH HHHCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCH HHAHLAACLAENQVDEPAIGVILDGTGYGTDGTVWGGEVLIGDVANFERFASLELMPLAG HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCEEEECHHCHHHHHCEEEEEECC GEAAIRQPWRAAVGYIYKSCGSLPDLPFLQNRDIAPIMELLERQLHLVETSSCGRLFDVV CHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH AALCNLRGTITYEGEAAIALMHAANGTVGRQPFPYDLCYQLNRWIIGIAPMIRSIVNSLL HHHHCCCCEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHEEHHHHHHHHHHHHH HGASAQEVSQRFHGTLVHCFCEVVQKASEATGLKIVALSGGVFQNELLFTALVHALEQAG CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC FTVLTHSRVPTNDGGLSLGQAIIGRRFLA CEEEEECCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MQRQRLLINGIVQGVGFRPFVYRLAIEHELTGFIRNTALGVLIEVQGSADRLDSFCTALH CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHC HQPPPLARIASFEMHFIPCVFEEATFVITDSHSGGDVETLIPPDIALCSDCRRELYDPTN CCCCCHHHHHCCHHEEEEEEECCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHCCCCC RRYRYPFINCTNCGPRYTIVAHLPYDRPTTSMQSFAICPECEQEYHNPLDRRFHAEPTCC CEEECCEEEECCCCCCEEEEEECCCCCCCCCHHHEECCCHHHHHHCCHHHHCCCCCCCCC PICGPSLSLLDADGNAIADDPLEETASLLHHGAIVAIKGIGGFHVAVDALNDDAVLRLRK CCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCHHEEEHH SKGREAKPFAVMMRDVAVVERYCMVNDDERQALLSAEAPIVLLKKLANTQLAASVAPDND HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCC RLGVMLPYTPLHLLLFDRVPEVLVMTSANMSEEPMVHENSEALQKLQGIADAFLMHNRPI CEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE YLKCDDSVTIHLAGQLRQLRRSRGYVPAPLLLRHSGATLLATGGELKNSVTLLKAHHAIM EEEECCCEEEEEHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCHHHHHHHHHHHHHHH SQHIGDVKNFDAYCHFEQVVAHLQHLFQATPELIVHDLHPAYLTTQWAEKQAIPTLGVQH HHHCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCH HHAHLAACLAENQVDEPAIGVILDGTGYGTDGTVWGGEVLIGDVANFERFASLELMPLAG HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCEEEECHHCHHHHHCEEEEEECC GEAAIRQPWRAAVGYIYKSCGSLPDLPFLQNRDIAPIMELLERQLHLVETSSCGRLFDVV CHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH AALCNLRGTITYEGEAAIALMHAANGTVGRQPFPYDLCYQLNRWIIGIAPMIRSIVNSLL HHHHCCCCEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHEEHHHHHHHHHHHHH HGASAQEVSQRFHGTLVHCFCEVVQKASEATGLKIVALSGGVFQNELLFTALVHALEQAG CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC FTVLTHSRVPTNDGGLSLGQAIIGRRFLA CEEEEECCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]