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The map label for this gene is ywbI [H]

Identifier: 78065860

GI number: 78065860

Start: 1347621

End: 1348577

Strand: Reverse

Name: ywbI [H]

Synonym: Bcep18194_A4389

Alternate gene names: 78065860

Gene position: 1348577-1347621 (Counterclockwise)

Preceding gene: 78065865

Following gene: 78065858

Centisome position: 36.51

GC content: 66.67

Gene sequence:

>957_bases
ATGCGCCCCGACCTCGCCCCGTTCCTGAACGACCGCCTCGACTGGAACCTGTTGCGCACCTATCTGGTGATCATCCAGGA
GCGCAGCGTGAGCCGCGCGGCCGCACGCCTGCACGTCACGCAGCCGGCCGTGAGCCAGGCATTGCGGCGCCTCGAGGACA
CGCTCGAACGCAAGCTGATCGAGCGGCGCGGCACGCACTTCGCGCCGACACCGGCCGGCGAAGCCGTCTACCGGATCGCG
AGCGACATCTACGGCGGCATCTCGCGCCTCGAAACCGAAATCGACGACAGCACGGCCGACCTGACCGGTTCGATCCGGCT
GCTGACCGTGAGTCGCATCGAGTCGCCCGTCTACGACGAATTCCTCGCGGAATTCCATCGCGCGTATCCGCGCATCGACC
TGCAGATCGAAGTGATGCGTTCGTCGGACATTTTGTCGTCGCTGCTGCAGAAGACGGCCACGGCCGGGCTCGGCCTGTGC
CGCACGCCGCACGACAAGCTGGAGATGCGCTGCTTCCTGCGCCAGCGCTATGCGATCTACTGCGGCCGCCATCACCGGCT
GTTCGGGCAGACGCAACTGCGGATGGACGATCTGCTCGCGGAGAATTTCGTGTCGTTCACGAGCGACCAGATCGGCGACA
GCCTGTCGCCGCTCACCGTGTTTCGCGACCAGAAGGGCTTCACGGGGCGCATCGTCGCGTCGTCGCCGAGCCTCGAGGAA
GTGCGGCGGCTGATCTTCGCCGGCTACGGGATCGGCTGCCTGCCCGAGCACATCGTGCGCGACGACATCGCGCAGCAGCG
GCTGTGGCGGCTGCCGCCCGACGACGGGCTCGTCGATGTCGACGTGTTCCTGCTGTGGCATCGCGATCGCAAGATGAACG
CGGCCGAGCATGCGTTTCTCGACGCGATGGAGCGCTGCATGCAGCGCTACTCGCTGGCGGAGCGGTTGGGGAAGTAG

Upstream 100 bases:

>100_bases
CTCCTTTATCGGCGACCGCGAATCATTAGTCAAATTTCAAGTTATTATTCGCCGTATAAATTCAACTAATGCTGACCCCG
ACGCCTCGCCCGGAGACCCG

Downstream 100 bases:

>100_bases
CAGGCACGACGACGCCGGTTGCGCGTCGGCCGGTCGTTCATCGCGGCGCCGCGCCGAGCGCCGTCGCCGCGCAATCCGCG
AAGACCGATTCGGCCAGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MRPDLAPFLNDRLDWNLLRTYLVIIQERSVSRAAARLHVTQPAVSQALRRLEDTLERKLIERRGTHFAPTPAGEAVYRIA
SDIYGGISRLETEIDDSTADLTGSIRLLTVSRIESPVYDEFLAEFHRAYPRIDLQIEVMRSSDILSSLLQKTATAGLGLC
RTPHDKLEMRCFLRQRYAIYCGRHHRLFGQTQLRMDDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVASSPSLEE
VRRLIFAGYGIGCLPEHIVRDDIAQQRLWRLPPDDGLVDVDVFLLWHRDRKMNAAEHAFLDAMERCMQRYSLAERLGK

Sequences:

>Translated_318_residues
MRPDLAPFLNDRLDWNLLRTYLVIIQERSVSRAAARLHVTQPAVSQALRRLEDTLERKLIERRGTHFAPTPAGEAVYRIA
SDIYGGISRLETEIDDSTADLTGSIRLLTVSRIESPVYDEFLAEFHRAYPRIDLQIEVMRSSDILSSLLQKTATAGLGLC
RTPHDKLEMRCFLRQRYAIYCGRHHRLFGQTQLRMDDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVASSPSLEE
VRRLIFAGYGIGCLPEHIVRDDIAQQRLWRLPPDDGLVDVDVFLLWHRDRKMNAAEHAFLDAMERCMQRYSLAERLGK
>Mature_318_residues
MRPDLAPFLNDRLDWNLLRTYLVIIQERSVSRAAARLHVTQPAVSQALRRLEDTLERKLIERRGTHFAPTPAGEAVYRIA
SDIYGGISRLETEIDDSTADLTGSIRLLTVSRIESPVYDEFLAEFHRAYPRIDLQIEVMRSSDILSSLLQKTATAGLGLC
RTPHDKLEMRCFLRQRYAIYCGRHHRLFGQTQLRMDDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVASSPSLEE
VRRLIFAGYGIGCLPEHIVRDDIAQQRLWRLPPDDGLVDVDVFLLWHRDRKMNAAEHAFLDAMERCMQRYSLAERLGK

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=288, Percent_Identity=27.4305555555556, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787530, Length=296, Percent_Identity=24.3243243243243, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787589, Length=121, Percent_Identity=31.404958677686, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=276, Percent_Identity=22.1014492753623, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=25.4295532646048, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=22.8373702422145, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36459; Mature: 36459

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPDLAPFLNDRLDWNLLRTYLVIIQERSVSRAAARLHVTQPAVSQALRRLEDTLERKLI
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ERRGTHFAPTPAGEAVYRIASDIYGGISRLETEIDDSTADLTGSIRLLTVSRIESPVYDE
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHCCHHHHH
FLAEFHRAYPRIDLQIEVMRSSDILSSLLQKTATAGLGLCRTPHDKLEMRCFLRQRYAIY
HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
CGRHHRLFGQTQLRMDDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVASSPSLEE
HCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCEEEEECCCCHHH
VRRLIFAGYGIGCLPEHIVRDDIAQQRLWRLPPDDGLVDVDVFLLWHRDRKMNAAEHAFL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHEEEEECCCCCCHHHHHHH
DAMERCMQRYSLAERLGK
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPDLAPFLNDRLDWNLLRTYLVIIQERSVSRAAARLHVTQPAVSQALRRLEDTLERKLI
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ERRGTHFAPTPAGEAVYRIASDIYGGISRLETEIDDSTADLTGSIRLLTVSRIESPVYDE
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHCCHHHHH
FLAEFHRAYPRIDLQIEVMRSSDILSSLLQKTATAGLGLCRTPHDKLEMRCFLRQRYAIY
HHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
CGRHHRLFGQTQLRMDDLLAENFVSFTSDQIGDSLSPLTVFRDQKGFTGRIVASSPSLEE
HCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCEEEEECCCCHHH
VRRLIFAGYGIGCLPEHIVRDDIAQQRLWRLPPDDGLVDVDVFLLWHRDRKMNAAEHAFL
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHEEEEECCCCCCHHHHHHH
DAMERCMQRYSLAERLGK
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]