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The map label for this gene is ydcN [C]

Identifier: 78065731

GI number: 78065731

Start: 1194399

End: 1195019

Strand: Reverse

Name: ydcN [C]

Synonym: Bcep18194_A4259

Alternate gene names: 78065731

Gene position: 1195019-1194399 (Counterclockwise)

Preceding gene: 78065734

Following gene: 78065730

Centisome position: 32.35

GC content: 69.24

Gene sequence:

>621_bases
ATGAAAGAATCAGCTACCGCCGTTGCCGACGACACCGGCATCAACGAACGCATCGCCCGGCGCGTACGCGACCTGCGCAC
CGTGCGAGGCTACACGCTCGATGCGCTGGCCGCGCGCTCCGGCGTCAGCCGTTCGATGATCTCGCTCATCGAACGCGCAT
CGGCCAGCCCGACGGCCGTCGTGCTCGACAAGCTCGCGGCCGGGCTCGGCGTGTCGCTGGCCGGGCTGTTCGGCGGCGAC
CAGGACGACACGCCCACGCAGCCGCTGGCGCGCCACGCGCAGCAGGCCGAATGGCGAGACCCTGCGTCCGGCTATGTACG
CCGCAATCTCTCCCCGGCCGGCTGGCCGTCGCCGATCCAGCTCGTCGAGGTGGATTTCCCGCCCGGTGCCCGCGTCGCGT
ACGACAGTGGCGGACGCGAAAGCGCGCTGCATCAGCAGGTGTGGGTCATCAGCGGCCGCGTCGACGTCACGTTCGGCGAC
GCGCTTCACGAACTTCACGAAGGCGACTGCCTGGCCATGCGGCTCGACCAGCCGCTGATTTTCAGCAATCCGTCGTCGCA
TGCCGCGCGCTATGTCGTCGCGATCTGCGATGCGTCCGCCGCCGGCGTGCGGAATCTCTGA

Upstream 100 bases:

>100_bases
GCCGCGCGCGACTGCCGGGCAAGCCGTTCGGATTCCATCGAGCCATCGGACGTCAATCCCGTTGACATCGAATTCCAGTT
TGCTGGAAAATAAATCCATC

Downstream 100 bases:

>100_bases
TGAACGCGTCGTCGCAGCAGCCGTGCGCGCGCCCTACTTACTGCCCACAGGAGCCCGTATGAATTCCCCGAAACAGCGCG
ACGACGTGCGCCTGATCGAT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Transcription Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKESATAVADDTGINERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGGD
QDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPGARVAYDSGGRESALHQQVWVISGRVDVTFGD
ALHELHEGDCLAMRLDQPLIFSNPSSHAARYVVAICDASAAGVRNL

Sequences:

>Translated_206_residues
MKESATAVADDTGINERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGGD
QDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPGARVAYDSGGRESALHQQVWVISGRVDVTFGD
ALHELHEGDCLAMRLDQPLIFSNPSSHAARYVVAICDASAAGVRNL
>Mature_206_residues
MKESATAVADDTGINERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLFGGD
QDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQLVEVDFPPGARVAYDSGGRESALHQQVWVISGRVDVTFGD
ALHELHEGDCLAMRLDQPLIFSNPSSHAARYVVAICDASAAGVRNL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21999; Mature: 21999

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKESATAVADDTGINERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHH
VLDKLAAGLGVSLAGLFGGDQDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQ
HHHHHHHCCCCEEHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEE
LVEVDFPPGARVAYDSGGRESALHQQVWVISGRVDVTFGDALHELHEGDCLAMRLDQPLI
EEEEECCCCCEEEECCCCCHHHHHHEEEEEECEEEEEHHHHHHHHCCCCEEEEECCCCEE
FSNPSSHAARYVVAICDASAAGVRNL
ECCCCHHHHEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKESATAVADDTGINERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCHHH
VLDKLAAGLGVSLAGLFGGDQDDTPTQPLARHAQQAEWRDPASGYVRRNLSPAGWPSPIQ
HHHHHHHCCCCEEHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEE
LVEVDFPPGARVAYDSGGRESALHQQVWVISGRVDVTFGDALHELHEGDCLAMRLDQPLI
EEEEECCCCCEEEECCCCCHHHHHHEEEEEECEEEEEHHHHHHHHCCCCEEEEECCCCEE
FSNPSSHAARYVVAICDASAAGVRNL
ECCCCHHHHEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA