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The map label for this gene is ytsP [H]

Identifier: 78065734

GI number: 78065734

Start: 1196357

End: 1196860

Strand: Reverse

Name: ytsP [H]

Synonym: Bcep18194_A4262

Alternate gene names: 78065734

Gene position: 1196860-1196357 (Counterclockwise)

Preceding gene: 78065735

Following gene: 78065731

Centisome position: 32.4

GC content: 66.87

Gene sequence:

>504_bases
ATGTTCACGCTGTCCAACGACCCCAACGCCTCCAAGGCCGATCAATACGCGACGCTCGTCGAGCAGGCACGCGCGCTCGT
CGAATCCGAACGCGACCTGACCGCGAACGCGGCCAATTTTTCCGCGCTGGTCTACCACTCGCTCGACCGTCTCAACTGGG
CCGGTTTCTACTTCTTCGACGGGACGGAACTCGTGGTCGGACCGTTCCAGGGCAAGCCCGCCTGCGTGCGGATCGCGCTC
GGCAAGGGCGTGTGCGGCACGGCCGCGCAGACGCGCGAGACGCAGGTCGTGCGCGACGTGCATGACTTCCCCGGCCATAT
CGCGTGCGACGCCGCATCGGAATCGGAAATCGTCGTGCCGCTGGTGGCCGCCGACGGCACGCTGATCGGCGTGTGGGACG
TCGACAGCCCGGTCGCCGCACGCTTCGACGACGAAGACCGCAAGGGGATGGAAGCGCTGTGCCGCGTGTTCGTCGAATCC
GCATGGCAGAAGGCGCGCGGTTGA

Upstream 100 bases:

>100_bases
GCGCCGCTTCACGCGTAACCGGGCGCTGCAAACCACGCACGCGTGCCGTAGACTGCGGTACGCGCATCGCGCATTCCACA
ACCCTGATCGTTTTCCCGCC

Downstream 100 bases:

>100_bases
GCGGCGGCCAAGCCGCGCTCCCCCACCGAGCAGCCGGTCGGCGCGTTCGCGCGTAAATCGCGCCGCGCAACCTGGAACGA
AAACGAAACGGGCCCCGCAA

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MFTLSNDPNASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQGKPACVRIAL
GKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVPLVAADGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVES
AWQKARG

Sequences:

>Translated_167_residues
MFTLSNDPNASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQGKPACVRIAL
GKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVPLVAADGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVES
AWQKARG
>Mature_167_residues
MFTLSNDPNASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQGKPACVRIAL
GKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVPLVAADGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVES
AWQKARG

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=143, Percent_Identity=53.1468531468531, Blast_Score=151, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6322781, Length=159, Percent_Identity=42.7672955974843, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 18082; Mature: 18082

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLSNDPNASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GTELVVGPFQGKPACVRIALGKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVP
CCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEE
LVAADGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVESAWQKARG
EEECCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFTLSNDPNASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GTELVVGPFQGKPACVRIALGKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVP
CCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEE
LVAADGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVESAWQKARG
EEECCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]