Click here to switch to the map view.

The map label for this gene is hcp1 [H]

Identifier: 78065432

GI number: 78065432

Start: 880616

End: 881083

Strand: Reverse

Name: hcp1 [H]

Synonym: Bcep18194_A3958

Alternate gene names: 78065432

Gene position: 881083-880616 (Counterclockwise)

Preceding gene: 78065433

Following gene: 78065431

Centisome position: 23.85

GC content: 53.85

Gene sequence:

>468_bases
ATGGCGCAGGACATTTTCCTGAAACTGACCGGCATCAGAGGTGAATCTCAAGATGCCTTTCATCTGGACGAGATCGACGT
ATTGGCGTGGGATTGGTCCGCAGATCAGTCGTCTACCACGCGCACGGGTGGCAAATGCACGGCCAATGACCTGACCATTG
AACATTATGTTGATCGCGCATCGCCGATTCTCATGCTGCATTGCCTGAAAGGAAATCACATCGAGAACGCCGTTCTGGTA
ATGCGTAAGGCCGGCGGCATGCCCCTGGAATACCTCAAGATCACGATGGATAAGGTATTGATCACGCGGGTCAACTCGGC
CGCAAATTTGAACATGGTCAGGCCGCGAGAGGAGGTCCAACTTTCATTCGCCGGCATCCGGCAGGAATATGTCGTTCAGA
ACGCCCAAGGAGGGAGCGGCGGAACTGTCGAAGCAGGATACGACATCAAAACCGGCAAAACGACCTGA

Upstream 100 bases:

>100_bases
ACCCAAACTCGCCGAAAATCGAATCGGTCCCATAGATTGGCCGTGATCTCCCCTGCTACGGTTCATTCCATTCAATGTGA
CCCGAGCAAAGGAGTATGTG

Downstream 100 bases:

>100_bases
GGATCGGAGGGAGTCATGCTTTTCATTTCAAAGCAGGGCCACGTCGATGCCGAGCGCGTGATCCTCAGAATATATTCATC
CATCGAACGTGGGCCGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAQDIFLKLTGIRGESQDAFHLDEIDVLAWDWSADQSSTTRTGGKCTANDLTIEHYVDRASPILMLHCLKGNHIENAVLV
MRKAGGMPLEYLKITMDKVLITRVNSAANLNMVRPREEVQLSFAGIRQEYVVQNAQGGSGGTVEAGYDIKTGKTT

Sequences:

>Translated_155_residues
MAQDIFLKLTGIRGESQDAFHLDEIDVLAWDWSADQSSTTRTGGKCTANDLTIEHYVDRASPILMLHCLKGNHIENAVLV
MRKAGGMPLEYLKITMDKVLITRVNSAANLNMVRPREEVQLSFAGIRQEYVVQNAQGGSGGTVEAGYDIKTGKTT
>Mature_154_residues
AQDIFLKLTGIRGESQDAFHLDEIDVLAWDWSADQSSTTRTGGKCTANDLTIEHYVDRASPILMLHCLKGNHIENAVLVM
RKAGGMPLEYLKITMDKVLITRVNSAANLNMVRPREEVQLSFAGIRQEYVVQNAQGGSGGTVEAGYDIKTGKTT

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17041; Mature: 16909

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDIFLKLTGIRGESQDAFHLDEIDVLAWDWSADQSSTTRTGGKCTANDLTIEHYVDRA
CCCEEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHCCC
SPILMLHCLKGNHIENAVLVMRKAGGMPLEYLKITMDKVLITRVNSAANLNMVRPREEVQ
CEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCCEEECCHHHHE
LSFAGIRQEYVVQNAQGGSGGTVEAGYDIKTGKTT
EHHHHCCCEEHEECCCCCCCCEEECCCEECCCCCC
>Mature Secondary Structure 
AQDIFLKLTGIRGESQDAFHLDEIDVLAWDWSADQSSTTRTGGKCTANDLTIEHYVDRA
CCEEEEEEECCCCCCCCCEECCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHCCC
SPILMLHCLKGNHIENAVLVMRKAGGMPLEYLKITMDKVLITRVNSAANLNMVRPREEVQ
CEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECCCCCCCEEECCHHHHE
LSFAGIRQEYVVQNAQGGSGGTVEAGYDIKTGKTT
EHHHHCCCEEHEECCCCCCCCEEECCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]