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The map label for this gene is 78048441

Identifier: 78048441

GI number: 78048441

Start: 3280183

End: 3281649

Strand: Reverse

Name: 78048441

Synonym: XCV2885

Alternate gene names: NA

Gene position: 3281649-3280183 (Counterclockwise)

Preceding gene: 78048443

Following gene: 78048439

Centisome position: 63.37

GC content: 64.35

Gene sequence:

>1467_bases
ATGCTGATCATGCCGCTGCACAAACCCTGGTCGAGGCAGAACATCCCCTGGGTGACGCTGCTGCTGGTGCTGATCAATGT
GGCGGTCTACCTGGGCTACCAGCGCAAGGACGACAGCCTGGTCGAGAGCGCCGTGCACTACTACGTGCACTCCGGCTTGG
GCGCGCTGGAGGCCGATGCGCATGCGCGCTACCTGCAGCAGACCGCCAACGCCAAGTTGCGCGCGGCACGCCAGGCAAAA
TTGGACAGCGTGCCTAAACCGCAACGCATCGCGTATCTGGCGCACCTGACGATGCACGATGTCGCCTTCGAACACGCCCT
GCGCAGCGGCACGTTGTTCAACGGCGACGCGCGTCTGCGCGAGTGGCGCGCATTGCGTGCGCCTTACGACACGCGGCTGT
CCAGGATATTTACGCTGCGCCATGTGCAGCGCAGTTCCGAATGGTCGCCAGCGCGCATGCCGACTGCCACGTTCCTGCAC
GGCAGCTTCGATCATTTGCTGGGCAACATGCTGTTCCTGCTTGCCTTGGGTACCTTGCTGGAAGGCGCGATCGGCAGTGG
CTGGTTCCTGGTGCTGTATCTGCTCGGCGGATTCGGCGCCAGCCTGGCCAGCTTGTGGTGGCGCTGGGGCGAGCCCGGTG
GCGGTCTGGGTGCCTCCGGTGCCATCGCCGCGCTGATGGGCGCGTTCTGCGTGGTCTGGGGCGGGCGCAGGGTGCGTTTT
TTCTATTGGTTTTTCGTCGTCTTCAATTACGTGCGCGGCCCGGCGATCCTGCTGTTGCCGCTGTGGCTGGGCTGGGAGTT
GTATAGCCTGGCATCCAGCGACGACGGCGCAGTCGCCTTCGAGGCGCATGCCGGCGGACTGGTGAGCGGTGCGTTGCTGG
GCGCCTTGCTAGTGGTGCTGCGGCAAACTCGGCCAGAATTTATGCAGGAGGGCGACGCGGTTGCGGTGGACGATCGCTGG
GAGCGTGCGCAGCGCCATCTGGGCCGGATGGAAAACGCCGAGGCCGAACATTTGCTGGCGGAGTTGGCGAGCGAGCAGCC
GCACAATCTGGAGGTTGCGCTTGCGCGCTATCGCGCTGCGCGTCATGCAGGGCGCAGCCAGGACAGCCTGCGCCATGCCG
AGACGCTGCTGGCCCTGCAGACCCATAGCGCCGAACAGACACGCATCCAGCTGGCAGTTGCCGCCGAACTCAGTAAGGCC
AGGATTGCCTGCAGCCCGACGGCGCGCAGGGCGCTGATCGCTGCGTGCATGCGTAACGGCCTGTTGGCCGATGCCGAGCG
TCTATTGAAGGAAAGCGAATTGAGTACGCCGCGCGATGAATTGGCCCAACAATGGTTCGTGCTTGCCTTGCGTCACGGTG
AGCTGCAGGACGGTGCGCAGCGCACGCGCTTGCTGCGCCAGCTGCTGGATCAGTTTCCCGAGCAGGGACAGGCCAAAAAA
GCACGCTTTTTGCTCGAAAACGGTTGA

Upstream 100 bases:

>100_bases
TTTCCAACGGCGGGGCCGCGATGCTAGCGCGCATGACGTGCTTGCGCATCTGCCGCCGCACAGCGAAGCTTTCCGCCATT
CTTAAGACACGGACGTTGTC

Downstream 100 bases:

>100_bases
GCGGTTTCTGCCCAACGCGTGCTCTTTGACTCGCGCGGCGCCGGGCGGGCAAGGGCCGGTCGCGTTGGCTGACATGCATG
GTTCGGAGCTTGATGGGATC

Product: rhomboid family membrane protein

Products: NA

Alternate protein names: Rhomboid Family Membrane Protein; Rhomboid Family Protein

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MLIMPLHKPWSRQNIPWVTLLLVLINVAVYLGYQRKDDSLVESAVHYYVHSGLGALEADAHARYLQQTANAKLRAARQAK
LDSVPKPQRIAYLAHLTMHDVAFEHALRSGTLFNGDARLREWRALRAPYDTRLSRIFTLRHVQRSSEWSPARMPTATFLH
GSFDHLLGNMLFLLALGTLLEGAIGSGWFLVLYLLGGFGASLASLWWRWGEPGGGLGASGAIAALMGAFCVVWGGRRVRF
FYWFFVVFNYVRGPAILLLPLWLGWELYSLASSDDGAVAFEAHAGGLVSGALLGALLVVLRQTRPEFMQEGDAVAVDDRW
ERAQRHLGRMENAEAEHLLAELASEQPHNLEVALARYRAARHAGRSQDSLRHAETLLALQTHSAEQTRIQLAVAAELSKA
RIACSPTARRALIAACMRNGLLADAERLLKESELSTPRDELAQQWFVLALRHGELQDGAQRTRLLRQLLDQFPEQGQAKK
ARFLLENG

Sequences:

>Translated_488_residues
MLIMPLHKPWSRQNIPWVTLLLVLINVAVYLGYQRKDDSLVESAVHYYVHSGLGALEADAHARYLQQTANAKLRAARQAK
LDSVPKPQRIAYLAHLTMHDVAFEHALRSGTLFNGDARLREWRALRAPYDTRLSRIFTLRHVQRSSEWSPARMPTATFLH
GSFDHLLGNMLFLLALGTLLEGAIGSGWFLVLYLLGGFGASLASLWWRWGEPGGGLGASGAIAALMGAFCVVWGGRRVRF
FYWFFVVFNYVRGPAILLLPLWLGWELYSLASSDDGAVAFEAHAGGLVSGALLGALLVVLRQTRPEFMQEGDAVAVDDRW
ERAQRHLGRMENAEAEHLLAELASEQPHNLEVALARYRAARHAGRSQDSLRHAETLLALQTHSAEQTRIQLAVAAELSKA
RIACSPTARRALIAACMRNGLLADAERLLKESELSTPRDELAQQWFVLALRHGELQDGAQRTRLLRQLLDQFPEQGQAKK
ARFLLENG
>Mature_488_residues
MLIMPLHKPWSRQNIPWVTLLLVLINVAVYLGYQRKDDSLVESAVHYYVHSGLGALEADAHARYLQQTANAKLRAARQAK
LDSVPKPQRIAYLAHLTMHDVAFEHALRSGTLFNGDARLREWRALRAPYDTRLSRIFTLRHVQRSSEWSPARMPTATFLH
GSFDHLLGNMLFLLALGTLLEGAIGSGWFLVLYLLGGFGASLASLWWRWGEPGGGLGASGAIAALMGAFCVVWGGRRVRF
FYWFFVVFNYVRGPAILLLPLWLGWELYSLASSDDGAVAFEAHAGGLVSGALLGALLVVLRQTRPEFMQEGDAVAVDDRW
ERAQRHLGRMENAEAEHLLAELASEQPHNLEVALARYRAARHAGRSQDSLRHAETLLALQTHSAEQTRIQLAVAAELSKA
RIACSPTARRALIAACMRNGLLADAERLLKESELSTPRDELAQQWFVLALRHGELQDGAQRTRLLRQLLDQFPEQGQAKK
ARFLLENG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54425; Mature: 54425

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIMPLHKPWSRQNIPWVTLLLVLINVAVYLGYQRKDDSLVESAVHYYVHSGLGALEADA
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
HARYLQQTANAKLRAARQAKLDSVPKPQRIAYLAHLTMHDVAFEHALRSGTLFNGDARLR
HHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHH
EWRALRAPYDTRLSRIFTLRHVQRSSEWSPARMPTATFLHGSFDHLLGNMLFLLALGTLL
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
EGAIGSGWFLVLYLLGGFGASLASLWWRWGEPGGGLGASGAIAALMGAFCVVWGGRRVRF
HCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
FYWFFVVFNYVRGPAILLLPLWLGWELYSLASSDDGAVAFEAHAGGLVSGALLGALLVVL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
RQTRPEFMQEGDAVAVDDRWERAQRHLGRMENAEAEHLLAELASEQPHNLEVALARYRAA
HHCCHHHHHCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
RHAGRSQDSLRHAETLLALQTHSAEQTRIQLAVAAELSKARIACSPTARRALIAACMRNG
HHCCCCHHHHHHHHHHHHHHHCCCHHHHEEHHHHHHHHHHHEECCHHHHHHHHHHHHHCC
LLADAERLLKESELSTPRDELAQQWFVLALRHGELQDGAQRTRLLRQLLDQFPEQGQAKK
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
ARFLLENG
HHHHHCCC
>Mature Secondary Structure
MLIMPLHKPWSRQNIPWVTLLLVLINVAVYLGYQRKDDSLVESAVHYYVHSGLGALEADA
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
HARYLQQTANAKLRAARQAKLDSVPKPQRIAYLAHLTMHDVAFEHALRSGTLFNGDARLR
HHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHH
EWRALRAPYDTRLSRIFTLRHVQRSSEWSPARMPTATFLHGSFDHLLGNMLFLLALGTLL
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
EGAIGSGWFLVLYLLGGFGASLASLWWRWGEPGGGLGASGAIAALMGAFCVVWGGRRVRF
HCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
FYWFFVVFNYVRGPAILLLPLWLGWELYSLASSDDGAVAFEAHAGGLVSGALLGALLVVL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
RQTRPEFMQEGDAVAVDDRWERAQRHLGRMENAEAEHLLAELASEQPHNLEVALARYRAA
HHCCHHHHHCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
RHAGRSQDSLRHAETLLALQTHSAEQTRIQLAVAAELSKARIACSPTARRALIAACMRNG
HHCCCCHHHHHHHHHHHHHHHCCCHHHHEEHHHHHHHHHHHEECCHHHHHHHHHHHHHCC
LLADAERLLKESELSTPRDELAQQWFVLALRHGELQDGAQRTRLLRQLLDQFPEQGQAKK
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
ARFLLENG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA