| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is pleD [H]
Identifier: 78047102
GI number: 78047102
Start: 1745757
End: 1747550
Strand: Reverse
Name: pleD [H]
Synonym: XCV1546
Alternate gene names: 78047102
Gene position: 1747550-1745757 (Counterclockwise)
Preceding gene: 78047105
Following gene: 78047100
Centisome position: 33.75
GC content: 66.16
Gene sequence:
>1794_bases ATGTGCCGTCTGCCAGCTGACTCGGCAAGCGAAGTGGAGCGTAGGCACGCCGCTTGCATCGGCCTCGACCAGACAATCGT GCCGGGGAACGCGGTGTTGACCAAACGAACCAAACGTCGCGCTGCCGGGGCCTCGCTGGTGGGCGGGCTGATCTTTGTCC TGATCGGCGTGGGCGGATATCTCACGACGCAGCGTTCGCTGTCGGACGCCGGCTGGGTGACGCACACGCAGGAAGTGATT GCCAGCATCGACGAAATCCAGGCGGGCATGCTGTCGGCGGAATCGTCGGCGCGCGGCTACGTCCTGACCGACAACGAGGC CTTTCTGGGCGTGTATGCCGATGCGATTGGCCGCCTGCCCGAGCGCATCGTGCGGCTGGATGCCCTGGTGCAGGACAACC CGACGCAGCGGCGCAATGTGGTCGTCCTGAGCCGTTTGGTGGACGCGCGCCTGGCGCAGATCGACGAGTTGTTGCATTGC TATCGCAAGCAAGGCCTGGATGGCGCGCGTGCGGCCATCGCGCGCGGGGTGTTCCAGACCGCTTCATCGCTGCGCCGCCA GGTGCAGGCCATGACGGAGCTGGAGCGGCAGCAACTGGTCAGGCGCAACGCGGCCACCACGCGCAGCGCACAGTGGGCGC TGTGGGTGACGGTGATCGGCATTGTCAGTGGCTTGCTGGTGATGCTGCTGGCCTACCGCTTGTTGTCGCGCGAGCTGGAA CGGCGTACGCGTGCCGAAGACGACGCCAGCCGGACCAGCGAGCGCCTGATCGAGTCGTTTGCCGTACTCGAACGCACCTC CGCTGGTCTGGAGGCACTGGCACGCTATTCCGGGCTGCTGCAGAACTGCCGCGACGCCGAAGAAGCGCTGGAAATCACTG CACGCACGATTGCACCGCTGATTCCCGGTGCCGCCGGCGCGGTCTACCTGCTGCGCGCCTCGCGCGACCGCGCCGAACAG GTGGTTGCCTGGGGCGAGATGGCCGACGACGCCAGTACCAGCATCGCACCGGACAACTGCTGGGCGCTGCGCCGCGACCG CACCCATGTGGTGATGGACGCCAGCGCCGGGATGCTATGCCAGCATGCCGGCGTCAAGCTCCCGGCGAATGCGGCCACTG CCTGCATTCCGCTATCGGCGCAGGGCACGCAGTTGGGAATGCTGGCATTGCGTAGCGAAGACCCTGACGATCTTGCCTCG TTGACCGTGGCCGAGGCGGCAGCGGAACAACTGTCCTTGGCGCTGCACAACCTGCGCTTGCGCGAAACGCTGCGCCAGCA ATCGATCCGCGACCCGTTGACAGGCCTGTACAACCGCCGCTATCTGGAAGAAACCCTCAATCACGAGTTGGCGCGCTGCA CGCGCCGGGCGCTGCCGTTGTCGGTACTGATGCTGGATGTGGATCACTTCAAGCGGTTCAACGACCTGCATGGGCACAGC GGCGGCGACCGCGTACTGGCGGCCATTGGCGAATTGCTGCTGGCGCAGACGCGTGGCGAAGACATCTGCTGCCGGTACGG CGGCGAAGAATTGACGATCATCCTGCCTGAGGTCGATCTGCCAACCGCCTGCATGATGGCGGAGAAACTGCGCGCCGGCA TCGAGGCCCTGCAGGTCATGGGCGACGGCGTCTGCCTGCCGAAGGTCACCGCCTCGTTCGGCGCAGCCAGCTTTCCCGAT CACGCCGGCACCGTGGCCTCGTTGTTGCAACGGGCGGACGCGGCGCTGTATCGCGCCAAGCAGGGTGGCCGCAATCAGGT CGTGGGCGCGGATGTCCTTGCATTCGTGGCCTGA
Upstream 100 bases:
>100_bases CATGACAGGTGAGTTGGTAATTGCCTAGAAAAATGACCAACGGGCGCCCTTTTCGGTGACTGCTTGCCAGCATACCGCCA CGACGCTGCTTCCGGGGGCA
Downstream 100 bases:
>100_bases ACGCAGGCAGCCGGGCGTGCTTTGTGCGGTCTGCCGTCAAGACTTGGGTTGCGCGGTCGACGCTCAGATCCGCATCGCGC GGGCTTGGCGAACCCGGGTG
Product: putative sensor protein
Products: NA
Alternate protein names: Stalked cell differentiation-controlling protein; Diguanylate cyclase; DGC; Diguanylate kinase [H]
Number of amino acids: Translated: 597; Mature: 597
Protein sequence:
>597_residues MCRLPADSASEVERRHAACIGLDQTIVPGNAVLTKRTKRRAAGASLVGGLIFVLIGVGGYLTTQRSLSDAGWVTHTQEVI ASIDEIQAGMLSAESSARGYVLTDNEAFLGVYADAIGRLPERIVRLDALVQDNPTQRRNVVVLSRLVDARLAQIDELLHC YRKQGLDGARAAIARGVFQTASSLRRQVQAMTELERQQLVRRNAATTRSAQWALWVTVIGIVSGLLVMLLAYRLLSRELE RRTRAEDDASRTSERLIESFAVLERTSAGLEALARYSGLLQNCRDAEEALEITARTIAPLIPGAAGAVYLLRASRDRAEQ VVAWGEMADDASTSIAPDNCWALRRDRTHVVMDASAGMLCQHAGVKLPANAATACIPLSAQGTQLGMLALRSEDPDDLAS LTVAEAAAEQLSLALHNLRLRETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRRALPLSVLMLDVDHFKRFNDLHGHS GGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPD HAGTVASLLQRADAALYRAKQGGRNQVVGADVLAFVA
Sequences:
>Translated_597_residues MCRLPADSASEVERRHAACIGLDQTIVPGNAVLTKRTKRRAAGASLVGGLIFVLIGVGGYLTTQRSLSDAGWVTHTQEVI ASIDEIQAGMLSAESSARGYVLTDNEAFLGVYADAIGRLPERIVRLDALVQDNPTQRRNVVVLSRLVDARLAQIDELLHC YRKQGLDGARAAIARGVFQTASSLRRQVQAMTELERQQLVRRNAATTRSAQWALWVTVIGIVSGLLVMLLAYRLLSRELE RRTRAEDDASRTSERLIESFAVLERTSAGLEALARYSGLLQNCRDAEEALEITARTIAPLIPGAAGAVYLLRASRDRAEQ VVAWGEMADDASTSIAPDNCWALRRDRTHVVMDASAGMLCQHAGVKLPANAATACIPLSAQGTQLGMLALRSEDPDDLAS LTVAEAAAEQLSLALHNLRLRETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRRALPLSVLMLDVDHFKRFNDLHGHS GGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPD HAGTVASLLQRADAALYRAKQGGRNQVVGADVLAFVA >Mature_597_residues MCRLPADSASEVERRHAACIGLDQTIVPGNAVLTKRTKRRAAGASLVGGLIFVLIGVGGYLTTQRSLSDAGWVTHTQEVI ASIDEIQAGMLSAESSARGYVLTDNEAFLGVYADAIGRLPERIVRLDALVQDNPTQRRNVVVLSRLVDARLAQIDELLHC YRKQGLDGARAAIARGVFQTASSLRRQVQAMTELERQQLVRRNAATTRSAQWALWVTVIGIVSGLLVMLLAYRLLSRELE RRTRAEDDASRTSERLIESFAVLERTSAGLEALARYSGLLQNCRDAEEALEITARTIAPLIPGAAGAVYLLRASRDRAEQ VVAWGEMADDASTSIAPDNCWALRRDRTHVVMDASAGMLCQHAGVKLPANAATACIPLSAQGTQLGMLALRSEDPDDLAS LTVAEAAAEQLSLALHNLRLRETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRRALPLSVLMLDVDHFKRFNDLHGHS GGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQVMGDGVCLPKVTASFGAASFPD HAGTVASLLQRADAALYRAKQGGRNQVVGADVLAFVA
Specific function: Catalyzes the condensation of two GTP molecules to the cyclic dinucleotide di-GMP (c-di-GMP), which acts as a secondary messenger [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm. Note=Phosphorylated PleD localizes to the differentiating pole [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 response regulatory domains [H]
Homologues:
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=37.125748502994, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=39.0804597701149, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=38.0116959064327, Blast_Score=113, Evalue=3e-26, Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=36.9942196531792, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=33.9285714285714, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI1787816, Length=173, Percent_Identity=35.8381502890173, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1787802, Length=195, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=30.2469135802469, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=31.1764705882353, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=27.810650887574, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI87081974, Length=173, Percent_Identity=24.2774566473988, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=29.3478260869565, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR011006 - InterPro: IPR000160 - InterPro: IPR001789 [H]
Pfam domain/function: PF00990 GGDEF; PF00072 Response_reg [H]
EC number: =2.7.7.65 [H]
Molecular weight: Translated: 64696; Mature: 64696
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCRLPADSASEVERRHAACIGLDQTIVPGNAVLTKRTKRRAAGASLVGGLIFVLIGVGGY CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH LTTQRSLSDAGWVTHTQEVIASIDEIQAGMLSAESSARGYVLTDNEAFLGVYADAIGRLP HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH ERIVRLDALVQDNPTQRRNVVVLSRLVDARLAQIDELLHCYRKQGLDGARAAIARGVFQT HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ASSLRRQVQAMTELERQQLVRRNAATTRSAQWALWVTVIGIVSGLLVMLLAYRLLSRELE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRTRAEDDASRTSERLIESFAVLERTSAGLEALARYSGLLQNCRDAEEALEITARTIAPL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPGAAGAVYLLRASRDRAEQVVAWGEMADDASTSIAPDNCWALRRDRTHVVMDASAGMLC CCCCCCHHEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEEEECCCCHHH QHAGVKLPANAATACIPLSAQGTQLGMLALRSEDPDDLASLTVAEAAAEQLSLALHNLRL HHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRRALPLSVLMLDVDHFKRFNDLHGHS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC GGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQVM CHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH GDGVCLPKVTASFGAASFPDHAGTVASLLQRADAALYRAKQGGRNQVVGADVLAFVA CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC >Mature Secondary Structure MCRLPADSASEVERRHAACIGLDQTIVPGNAVLTKRTKRRAAGASLVGGLIFVLIGVGGY CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH LTTQRSLSDAGWVTHTQEVIASIDEIQAGMLSAESSARGYVLTDNEAFLGVYADAIGRLP HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH ERIVRLDALVQDNPTQRRNVVVLSRLVDARLAQIDELLHCYRKQGLDGARAAIARGVFQT HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ASSLRRQVQAMTELERQQLVRRNAATTRSAQWALWVTVIGIVSGLLVMLLAYRLLSRELE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRTRAEDDASRTSERLIESFAVLERTSAGLEALARYSGLLQNCRDAEEALEITARTIAPL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPGAAGAVYLLRASRDRAEQVVAWGEMADDASTSIAPDNCWALRRDRTHVVMDASAGMLC CCCCCCHHEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEEEECCCCHHH QHAGVKLPANAATACIPLSAQGTQLGMLALRSEDPDDLASLTVAEAAAEQLSLALHNLRL HHCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RETLRQQSIRDPLTGLYNRRYLEETLNHELARCTRRALPLSVLMLDVDHFKRFNDLHGHS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC GGDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLPTACMMAEKLRAGIEALQVM CHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH GDGVCLPKVTASFGAASFPDHAGTVASLLQRADAALYRAKQGGRNQVVGADVLAFVA CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA