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The map label for this gene is dppB [H]

Identifier: 78044226

GI number: 78044226

Start: 1002943

End: 1003947

Strand: Direct

Name: dppB [H]

Synonym: CHY_1129

Alternate gene names: 78044226

Gene position: 1002943-1003947 (Clockwise)

Preceding gene: 78044807

Following gene: 78044777

Centisome position: 41.76

GC content: 43.08

Gene sequence:

>1005_bases
ATGGCCAACTATATAGTGAGAAGATTATTACAACTGATTCCGGTACTCTTCGGGATAACCTTTCTTTCTTTTATGCTCAT
ACATTTTATTCCCGGCGATCCGGTGACGGTTATTCTTGGAGAACATGCTTCACCGGAAAGGGCAGCGGAACTACGAGAGC
AATTGGGTTTAAACGACCCTTTATATAAGCAGTATTTAAAGTTTTTGAATAACTTACTCCATGGAGACCTGGGACGTTCG
ATTATAACCCATGAAAAAGTCCTAAAAGAATTGGCAACCTTTTTTCCGGCAACGGTCGAGTTAACGCTTGCTGCCATGTT
TATTGCTACCATTATCGGAATTGCAGCAGGAATTGTGGCAGCGGTTAAGCAGTATTCGTGGTTTGATAATTTAAGTATGA
TTGGAGCTTTAACGGGGGTTTCCATGCCGATTTTTTGGCTGGGTTTGATGCTTATATACCTTTTTGCCCAAGTTTTAGGG
TGGCTTCCTCCGTCCGCCCGTTTAAGCATTGAATATTCGGTTCCAACTGTTACCAATTTATACTTGATTGATACTTTATT
GGCGGGCAACTGGGCGGCGTTTAAGGATGCTTTAGCCCACCTAATCTTACCGGCTTTAGCTTTAGGAACAATTCCAATGT
CGATTATTGCCCGCATGACCCGGAGTTCGATGCTGGAGGTTTTACGCCAGGACTACATCCGTACTGCCCGGGCCAAAGGT
CTTGGAGAAGCAACGGTAATTTTAAAACACGCTTTAAAAAATGCTTTTTTACCGGTAGTAACCGTTATTGGTTTGCAGTT
TGGGTACCTTTTAGGCGGGGCGGTCATGACCGAAACGGTGTTTTCCTGGCCGGGGGTAGGACGGTATATTTATCAAGCCA
TTATGGCCAGGGATTTTCCCGTGGTTCAGGGTAGTATCACAATTATCGCCTTAATTTTTGTTTTAATTAATTTAATTGTC
GATATTTTATATACGGTAATAGACCCCCGAATCCGGTATCAGTAG

Upstream 100 bases:

>100_bases
GGTAGTGAATGTTTCTTTAAAGTTGATAAAGAAGAGTAACACGGGTTATAAAGAAGGGGGTAAATAACCCCCTTCTTTTA
AAAATGGAGGTATACTGTGT

Downstream 100 bases:

>100_bases
CAGGAGGATAGCGATGGGTAAATTTTGGGAAAAAGACTGGATAAAACGCCTTTTGCAGAATAAAGCGGCGGTGGTAGGTT
TAATTATTGTCTTACTATTA

Product: oligopeptide/dipeptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MANYIVRRLLQLIPVLFGITFLSFMLIHFIPGDPVTVILGEHASPERAAELREQLGLNDPLYKQYLKFLNNLLHGDLGRS
IITHEKVLKELATFFPATVELTLAAMFIATIIGIAAGIVAAVKQYSWFDNLSMIGALTGVSMPIFWLGLMLIYLFAQVLG
WLPPSARLSIEYSVPTVTNLYLIDTLLAGNWAAFKDALAHLILPALALGTIPMSIIARMTRSSMLEVLRQDYIRTARAKG
LGEATVILKHALKNAFLPVVTVIGLQFGYLLGGAVMTETVFSWPGVGRYIYQAIMARDFPVVQGSITIIALIFVLINLIV
DILYTVIDPRIRYQ

Sequences:

>Translated_334_residues
MANYIVRRLLQLIPVLFGITFLSFMLIHFIPGDPVTVILGEHASPERAAELREQLGLNDPLYKQYLKFLNNLLHGDLGRS
IITHEKVLKELATFFPATVELTLAAMFIATIIGIAAGIVAAVKQYSWFDNLSMIGALTGVSMPIFWLGLMLIYLFAQVLG
WLPPSARLSIEYSVPTVTNLYLIDTLLAGNWAAFKDALAHLILPALALGTIPMSIIARMTRSSMLEVLRQDYIRTARAKG
LGEATVILKHALKNAFLPVVTVIGLQFGYLLGGAVMTETVFSWPGVGRYIYQAIMARDFPVVQGSITIIALIFVLINLIV
DILYTVIDPRIRYQ
>Mature_333_residues
ANYIVRRLLQLIPVLFGITFLSFMLIHFIPGDPVTVILGEHASPERAAELREQLGLNDPLYKQYLKFLNNLLHGDLGRSI
ITHEKVLKELATFFPATVELTLAAMFIATIIGIAAGIVAAVKQYSWFDNLSMIGALTGVSMPIFWLGLMLIYLFAQVLGW
LPPSARLSIEYSVPTVTNLYLIDTLLAGNWAAFKDALAHLILPALALGTIPMSIIARMTRSSMLEVLRQDYIRTARAKGL
GEATVILKHALKNAFLPVVTVIGLQFGYLLGGAVMTETVFSWPGVGRYIYQAIMARDFPVVQGSITIIALIFVLINLIVD
ILYTVIDPRIRYQ

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=52.5073746312684, Blast_Score=342, Evalue=2e-95,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=44.6107784431138, Blast_Score=297, Evalue=5e-82,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=49.079754601227, Blast_Score=268, Evalue=3e-73,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=38.2089552238806, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=36.7164179104478, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=36.4963503649635, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1788504, Length=379, Percent_Identity=27.7044854881267, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36991; Mature: 36860

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANYIVRRLLQLIPVLFGITFLSFMLIHFIPGDPVTVILGEHASPERAAELREQLGLNDP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCH
LYKQYLKFLNNLLHGDLGRSIITHEKVLKELATFFPATVELTLAAMFIATIIGIAAGIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AVKQYSWFDNLSMIGALTGVSMPIFWLGLMLIYLFAQVLGWLPPSARLSIEYSVPTVTNL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
YLIDTLLAGNWAAFKDALAHLILPALALGTIPMSIIARMTRSSMLEVLRQDYIRTARAKG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGEATVILKHALKNAFLPVVTVIGLQFGYLLGGAVMTETVFSWPGVGRYIYQAIMARDFP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
VVQGSITIIALIFVLINLIVDILYTVIDPRIRYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ANYIVRRLLQLIPVLFGITFLSFMLIHFIPGDPVTVILGEHASPERAAELREQLGLNDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCH
LYKQYLKFLNNLLHGDLGRSIITHEKVLKELATFFPATVELTLAAMFIATIIGIAAGIVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AVKQYSWFDNLSMIGALTGVSMPIFWLGLMLIYLFAQVLGWLPPSARLSIEYSVPTVTNL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
YLIDTLLAGNWAAFKDALAHLILPALALGTIPMSIIARMTRSSMLEVLRQDYIRTARAKG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGEATVILKHALKNAFLPVVTVIGLQFGYLLGGAVMTETVFSWPGVGRYIYQAIMARDFP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
VVQGSITIIALIFVLINLIVDILYTVIDPRIRYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]