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The map label for this gene is fliN [H]

Identifier: 78043764

GI number: 78043764

Start: 886315

End: 886689

Strand: Direct

Name: fliN [H]

Synonym: CHY_1003

Alternate gene names: 78043764

Gene position: 886315-886689 (Clockwise)

Preceding gene: 78044175

Following gene: 78042737

Centisome position: 36.91

GC content: 45.07

Gene sequence:

>375_bases
TTGGGTATTCGCGATGTGGATGAATTTTTAAAAAAAATGGTTGACGATGTTCCTACATACCGGAAACCGGAATTTTCACC
ATTAGAGCCGGTACCGACCGGGCAAAGGAAGTTACCGATGTCCCTTTTAAATAACATTAAAATGGAGATCGTGGCCCGGA
TGGGTACCACCGAGCTGACCGTGCGCCAGCTTTTAGCTTTAAAAGAAGGAGATGTCCTGGAGCTGGATAAAAGTATTGGC
GATTTAATCGACCTTTTTATTGACGGTCGGCGGTTTGCTGTTGGAGAAGTGGTGGTGATTAATGAAATGTACGGAGTGAG
GATCACCGGCTATTCTGATGAAGATACCGGGAAAGAGGCGAAAAAAATTGGGTAG

Upstream 100 bases:

>100_bases
GCGGAACTTAACAAAAAGGTCGAGAAAAAGTCCGAAAAAATTGTCATCGTAAACGTGTATTTCAGCGATTTTATTATCCA
GTAATAAGGGAGGTTGTTCC

Downstream 100 bases:

>100_bases
TTATTTTGTGCAAATTTTTTGGTCGTTTTTTGTACTTGTTTTGCTTCTGGCCGGTTTGTTCCTCCTTGCCCGGTACCTGA
AAAACTTCCGCATCGGTTTC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MGIRDVDEFLKKMVDDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIG
DLIDLFIDGRRFAVGEVVVINEMYGVRITGYSDEDTGKEAKKIG

Sequences:

>Translated_124_residues
MGIRDVDEFLKKMVDDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIG
DLIDLFIDGRRFAVGEVVVINEMYGVRITGYSDEDTGKEAKKIG
>Mature_123_residues
GIRDVDEFLKKMVDDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGD
LIDLFIDGRRFAVGEVVVINEMYGVRITGYSDEDTGKEAKKIG

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13929; Mature: 13798

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIRDVDEFLKKMVDDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELT
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
VRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINEMYGVRITGYSDEDTGKEA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCEEEECCCCCCCCCHH
KKIG
HCCC
>Mature Secondary Structure 
GIRDVDEFLKKMVDDVPTYRKPEFSPLEPVPTGQRKLPMSLLNNIKMEIVARMGTTELT
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
VRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINEMYGVRITGYSDEDTGKEA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCEEEECCCCCCCCCHH
KKIG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]