Definition Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome.
Accession NC_007503
Length 2,401,520

Click here to switch to the map view.

The map label for this gene is 78043445

Identifier: 78043445

GI number: 78043445

Start: 1104712

End: 1105818

Strand: Direct

Name: 78043445

Synonym: CHY_1238

Alternate gene names: NA

Gene position: 1104712-1105818 (Clockwise)

Preceding gene: 78042754

Following gene: 78045036

Centisome position: 46.0

GC content: 41.55

Gene sequence:

>1107_bases
ATGAGTTCCGAAGTTTATTTTGTGAATGTGCGTGCCCAGAAAGGAGCAAGTTTACTGGAAAAACTGGAACGCTTGATTGA
CCGGAGCGGGTTAATGGATATTGTAGCACCAAATGATTTGGTGGCAATTAAGCTTCATTTTGGCGAAAGGGGAAATACCG
CTTATATTAGACCTCAATTTATCAGGAGAATAGTTAACAAAGTTAAAGCCAAAAAAGGAAAACCCTTTCTGACCGATGCC
AATACCTTGTATGTCGGGAGCAGGGCCAATGCCGTCGATCACCTGGAAACTGCTATTGAAAATGGTTTTGACTATGCTGT
AGTGGGTGCTCCCTTAATAATTGCCGATGGTCTTACCGGAAAGGATTACATAAAAGTGCCAGTTAATTTAAAACATTTTA
AAGAAGTAAACATTGGAAGTGCTGCCGTCTTAGCCGATGCCCTAATTGCTGTAACCCATTTTAAGGGCCACGAAGCTACC
GGTTTTGGCGGAACCCTGAAAAATATAGGAATGGGTTTGGGAAGCCGTTCGGGAAAACAGCAAATGCACTCCGATCTGCT
GCCGGAAGTTAATGCGGAAATCTGTACCGGCTGCCGAAAATGTGCCCGCTGGTGTCCGGCTCAAGCCATTTCGTATGAAA
ACGGCAAAGCCGTCATAAACTATGAGCTCTGCATAGGTTGCGGTGAATGTACCGTAACCTGCAATTACCATGCCATAAAA
ATTAACTGGAAAGATGAAAATGATGTTATTCAGGAAAAAATTGTTGAATACACCTATGGCGTTTTAAAAGACAAAAAAGG
AAAAGCTGCTTTTATTACTTTTTTAACTGACATTTCCCCGGATTGTGATTGCTGCAGTTGGAATGATGTTCCCCTGGTGC
CAGATATAGGTATTTTAGCTTCCTTTGATCCCATAGCTATTGACCAAGCAGCCGTGGATTTAGTGAATAATGCTGGATCT
ATTGAGAACTCCGTTATAGGTAAATTAGCTCCGGGGGTTGATAAGATTAAAGCTAACAAGCCTTCAATTAACTGGGAGAA
ACAGTTGATTTATGGGGAAGCAATAGGTTTAGGCTCCCGAAAATACAAGTTAATTGAAGTTAAATAA

Upstream 100 bases:

>100_bases
TTAGGGACTGCCACCTACATATTATCAATACTTGCCGCCGGTTATTTAATTTATTTAATTTTTAAGTCAGGAAAATGGCA
TTAAACGAAGGGGGAGATTT

Downstream 100 bases:

>100_bases
TAATCTTTTTGACAATTACATCTAACTTAACAATTTCAATACCGGTTTGTCCTTCAAATTCCTTGATAACGTGTGGTATA
AATTTTTTAATTTGCTGGGG

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQFIRRIVNKVKAKKGKPFLTDA
NTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTGKDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEAT
GFGGTLKNIGMGLGSRSGKQQMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK
INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILASFDPIAIDQAAVDLVNNAGS
IENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSRKYKLIEVK

Sequences:

>Translated_368_residues
MSSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQFIRRIVNKVKAKKGKPFLTDA
NTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTGKDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEAT
GFGGTLKNIGMGLGSRSGKQQMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK
INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILASFDPIAIDQAAVDLVNNAGS
IENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSRKYKLIEVK
>Mature_367_residues
SSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQFIRRIVNKVKAKKGKPFLTDAN
TLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTGKDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEATG
FGGTLKNIGMGLGSRSGKQQMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIKI
NWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILASFDPIAIDQAAVDLVNNAGSI
ENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSRKYKLIEVK

Specific function: Unknown

COG id: COG2768

COG function: function code R; Uncharacterized Fe-S center protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40061; Mature: 39929

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQF
CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEECHHH
IRRIVNKVKAKKGKPFLTDANTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTG
HHHHHHHHHHCCCCCEEECCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCC
KDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEATGFGGTLKNIGMGLGSRSGKQ
CCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHH
QMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK
HHHHHCCCCCCHHHHHHHHHHHHHCCHHHEECCCCCEEEEEEEEEECCCEEEEEEEEEEE
INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILA
EEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHC
SFDPIAIDQAAVDLVNNAGSIENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSR
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEHEECCCCC
KYKLIEVK
CEEEEEEC
>Mature Secondary Structure 
SSEVYFVNVRAQKGASLLEKLERLIDRSGLMDIVAPNDLVAIKLHFGERGNTAYIRPQF
CCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEECHHH
IRRIVNKVKAKKGKPFLTDANTLYVGSRANAVDHLETAIENGFDYAVVGAPLIIADGLTG
HHHHHHHHHHCCCCCEEECCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEEECCCCC
KDYIKVPVNLKHFKEVNIGSAAVLADALIAVTHFKGHEATGFGGTLKNIGMGLGSRSGKQ
CCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHH
QMHSDLLPEVNAEICTGCRKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIK
HHHHHCCCCCCHHHHHHHHHHHHHCCHHHEECCCCCEEEEEEEEEECCCEEEEEEEEEEE
INWKDENDVIQEKIVEYTYGVLKDKKGKAAFITFLTDISPDCDCCSWNDVPLVPDIGILA
EEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHC
SFDPIAIDQAAVDLVNNAGSIENSVIGKLAPGVDKIKANKPSINWEKQLIYGEAIGLGSR
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEHEECCCCC
KYKLIEVK
CEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA