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The map label for this gene is ydaM [H]

Identifier: 77465346

GI number: 77465346

Start: 408103

End: 409575

Strand: Reverse

Name: ydaM [H]

Synonym: RSP_3344

Alternate gene names: 77465346

Gene position: 409575-408103 (Counterclockwise)

Preceding gene: 77465348

Following gene: 77465343

Centisome position: 43.43

GC content: 65.65

Gene sequence:

>1473_bases
ATGACCGCTACGACGAGGCCGATCGAAGAGGCTGCCTTCGATCTCGCCCCGATCTCGATGTGGATCGAGGATTTCAGCGG
CGTCCGGGCCCTGTTCGACCAGTGGCGCGCCGAGGGCGTGACCGACATCCGGGCCTTCCTCGAGGCCGACCTGTCGCGTG
TCGCCGCCTGTTCGCGGAGCATCAAGGTTCTCAGGGTGAATGCCCGCACGCTCGCCCTCTACGAGGCGCGCGATCTCGCC
CATCTGACGGAGAACCTCGAACGGGTCTTTCGCGACGACATGCTCCAGAGCCATGTGAACGAGCTGTCGCAGCTCTGGGC
GGGCGAGCAGACCTTCTCCAGCCTCGCGGTCAACTATACACTGGGCGGGCGCCGGCTCGACATCCAGCTGCGCGGGGCGG
TGCTGCCCGGATCCGAACAGAGCCTCGATCGGATCCTCCTGACCTGCGAGGATGTGACCGCCCGCGAAGAGGCGCGCAGG
CTCGAACGCGCGAGCCGGCGCTACGCCGAGGGCATCTTCGAATATTCGCCGACCTCGCTCTGGGTCGAGGATTTCAGCCA
GATCCGCCAGCTTCTCGAAAATCTGCGCGCGCGCGGGATCGTGGATCTGCGGGTCTTCACCGACGTCCACCCCGAGTTCG
TCCGGCAATGCATGGGCGAGATCCGGGTGATCGACGTGAACCAGGCCACGCTCGACATGTTCTGCGCCCCCGACAAGCGC
ACGCTTCTCAGCCATCTGCGCGACATCTTCCGCGACAGCATGGAGCCGCATTTCCGCGAGCAGCTGATCGAGCTCTGGAA
CCATCACTATTACCACAGCCGCGAGGTGGTGAATTACGCGCTCGACGGCAGCGAACGGGCGGTCATCATGCATTTCGCCG
TTCTGCCCGGGCACGAGCACGACTGGTCGCTGGTTCAGGTGGCGCTGACCGACATCACGGCCCGCAAGAAGGCCGAGGCC
TACCTCGCCTATCTCGGCAAGCACGATGTGCTGACGGGGGTGAACAACCGGGCCTTCTACATCGACGAGCTGAACCGGCT
CGAGCGGCAGGGGGTGCGGCCGGTCTCCATCGTGATGCTGGATCTGAACGGACTGAAGGGCGTGAACGACGCGCTCGGCC
ATGACGCGGGCGACCAGCTGCTCCGGCGGCTGGGCGAAGTGCTGAAGGAGGCGGCGGCCGAGACGAACCATCCCGCCCGC
ATCGGGGGCGACGAATTCGCGGTGGTCATGCCGCGGTCGAGCGAGGCGATGGCGCAGGCGATGGTCGACACGATCAAGCG
GCTCCTCACGGTGAACAACCGCTTCCATTTCATGGCCCCGCTCTCGGTCTCGATCGGCCATGCGACGAGCCAGCCCAACG
AGACGATGGAGGCCACGATCAAGCGGGCCGACCGGCACATGTATGAGGAAAAGCGCAAGTTCTACGCCGAAGCCGACCGG
CGCGGAGCGCAGGCCAGCCGGACGGCAAGCTAG

Upstream 100 bases:

>100_bases
GCCGTGCCGCGCAGGCAGCGAGGTTCCATTTGCGGGCTCTCCTCGCTCCCGTGTATGAGTCGCGATTGTCGGTTCAAGAA
TCCCTCAAGAGGCGCATGGC

Downstream 100 bases:

>100_bases
GGGGCCTCAGCCGCCCCGGGGCCGCCGGACCCAGTGGCCCGGGCCCTGTGCCTGCGCCGGCGGGCGGCTTACATCCGTCA
GAAGCCGCGCGAGATCGGCG

Product: PAS sensor diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MTATTRPIEEAAFDLAPISMWIEDFSGVRALFDQWRAEGVTDIRAFLEADLSRVAACSRSIKVLRVNARTLALYEARDLA
HLTENLERVFRDDMLQSHVNELSQLWAGEQTFSSLAVNYTLGGRRLDIQLRGAVLPGSEQSLDRILLTCEDVTAREEARR
LERASRRYAEGIFEYSPTSLWVEDFSQIRQLLENLRARGIVDLRVFTDVHPEFVRQCMGEIRVIDVNQATLDMFCAPDKR
TLLSHLRDIFRDSMEPHFREQLIELWNHHYYHSREVVNYALDGSERAVIMHFAVLPGHEHDWSLVQVALTDITARKKAEA
YLAYLGKHDVLTGVNNRAFYIDELNRLERQGVRPVSIVMLDLNGLKGVNDALGHDAGDQLLRRLGEVLKEAAAETNHPAR
IGGDEFAVVMPRSSEAMAQAMVDTIKRLLTVNNRFHFMAPLSVSIGHATSQPNETMEATIKRADRHMYEEKRKFYAEADR
RGAQASRTAS

Sequences:

>Translated_490_residues
MTATTRPIEEAAFDLAPISMWIEDFSGVRALFDQWRAEGVTDIRAFLEADLSRVAACSRSIKVLRVNARTLALYEARDLA
HLTENLERVFRDDMLQSHVNELSQLWAGEQTFSSLAVNYTLGGRRLDIQLRGAVLPGSEQSLDRILLTCEDVTAREEARR
LERASRRYAEGIFEYSPTSLWVEDFSQIRQLLENLRARGIVDLRVFTDVHPEFVRQCMGEIRVIDVNQATLDMFCAPDKR
TLLSHLRDIFRDSMEPHFREQLIELWNHHYYHSREVVNYALDGSERAVIMHFAVLPGHEHDWSLVQVALTDITARKKAEA
YLAYLGKHDVLTGVNNRAFYIDELNRLERQGVRPVSIVMLDLNGLKGVNDALGHDAGDQLLRRLGEVLKEAAAETNHPAR
IGGDEFAVVMPRSSEAMAQAMVDTIKRLLTVNNRFHFMAPLSVSIGHATSQPNETMEATIKRADRHMYEEKRKFYAEADR
RGAQASRTAS
>Mature_489_residues
TATTRPIEEAAFDLAPISMWIEDFSGVRALFDQWRAEGVTDIRAFLEADLSRVAACSRSIKVLRVNARTLALYEARDLAH
LTENLERVFRDDMLQSHVNELSQLWAGEQTFSSLAVNYTLGGRRLDIQLRGAVLPGSEQSLDRILLTCEDVTAREEARRL
ERASRRYAEGIFEYSPTSLWVEDFSQIRQLLENLRARGIVDLRVFTDVHPEFVRQCMGEIRVIDVNQATLDMFCAPDKRT
LLSHLRDIFRDSMEPHFREQLIELWNHHYYHSREVVNYALDGSERAVIMHFAVLPGHEHDWSLVQVALTDITARKKAEAY
LAYLGKHDVLTGVNNRAFYIDELNRLERQGVRPVSIVMLDLNGLKGVNDALGHDAGDQLLRRLGEVLKEAAAETNHPARI
GGDEFAVVMPRSSEAMAQAMVDTIKRLLTVNNRFHFMAPLSVSIGHATSQPNETMEATIKRADRHMYEEKRKFYAEADRR
GAQASRTAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=30.5699481865285, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=155, Percent_Identity=32.258064516129, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=34.9397590361446, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=28.476821192053, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787262, Length=153, Percent_Identity=27.4509803921569, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI145693134, Length=155, Percent_Identity=30.3225806451613, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=151, Percent_Identity=29.1390728476821, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=27.4390243902439, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788085, Length=153, Percent_Identity=25.4901960784314, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 55805; Mature: 55674

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATTRPIEEAAFDLAPISMWIEDFSGVRALFDQWRAEGVTDIRAFLEADLSRVAACSRS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
IKVLRVNARTLALYEARDLAHLTENLERVFRDDMLQSHVNELSQLWAGEQTFSSLAVNYT
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEE
LGGRRLDIQLRGAVLPGSEQSLDRILLTCEDVTAREEARRLERASRRYAEGIFEYSPTSL
ECCEEEEEEEECEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
WVEDFSQIRQLLENLRARGIVDLRVFTDVHPEFVRQCMGEIRVIDVNQATLDMFCAPDKR
HHHHHHHHHHHHHHHHHCCEEEEEEHHCCCHHHHHHHHCCEEEEECCHHHHHHEECCCHH
TLLSHLRDIFRDSMEPHFREQLIELWNHHYYHSREVVNYALDGSERAVIMHFAVLPGHEH
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCC
DWSLVQVALTDITARKKAEAYLAYLGKHDVLTGVNNRAFYIDELNRLERQGVRPVSIVML
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEHHHHHHHHHCCCCEEEEEEE
DLNGLKGVNDALGHDAGDQLLRRLGEVLKEAAAETNHPARIGGDEFAVVMPRSSEAMAQA
ECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEECCCHHHHHHH
MVDTIKRLLTVNNRFHFMAPLSVSIGHATSQPNETMEATIKRADRHMYEEKRKFYAEADR
HHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGAQASRTAS
CCCCCCCCCC
>Mature Secondary Structure 
TATTRPIEEAAFDLAPISMWIEDFSGVRALFDQWRAEGVTDIRAFLEADLSRVAACSRS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
IKVLRVNARTLALYEARDLAHLTENLERVFRDDMLQSHVNELSQLWAGEQTFSSLAVNYT
CEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEE
LGGRRLDIQLRGAVLPGSEQSLDRILLTCEDVTAREEARRLERASRRYAEGIFEYSPTSL
ECCEEEEEEEECEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
WVEDFSQIRQLLENLRARGIVDLRVFTDVHPEFVRQCMGEIRVIDVNQATLDMFCAPDKR
HHHHHHHHHHHHHHHHHCCEEEEEEHHCCCHHHHHHHHCCEEEEECCHHHHHHEECCCHH
TLLSHLRDIFRDSMEPHFREQLIELWNHHYYHSREVVNYALDGSERAVIMHFAVLPGHEH
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCC
DWSLVQVALTDITARKKAEAYLAYLGKHDVLTGVNNRAFYIDELNRLERQGVRPVSIVML
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEHHHHHHHHHCCCCEEEEEEE
DLNGLKGVNDALGHDAGDQLLRRLGEVLKEAAAETNHPARIGGDEFAVVMPRSSEAMAQA
ECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEECCCHHHHHHH
MVDTIKRLLTVNNRFHFMAPLSVSIGHATSQPNETMEATIKRADRHMYEEKRKFYAEADR
HHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGAQASRTAS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]