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The map label for this gene is rarD [C]

Identifier: 77465343

GI number: 77465343

Start: 404419

End: 405318

Strand: Reverse

Name: rarD [C]

Synonym: RSP_3340

Alternate gene names: 77465343

Gene position: 405318-404419 (Counterclockwise)

Preceding gene: 77465346

Following gene: 77465340

Centisome position: 42.98

GC content: 68.33

Gene sequence:

>900_bases
ATGGCCGACGCAACCCTTCCCCGCAACGAAGACAGCCCGCGCGGCATGGCCTTTGCCCTGTCGGCCTATCTCATCTGGGG
CTTCCTGCCGGTCTACATGAAGGCGCTGTCGCATATCCCGGCCTACGAGGTGGTGGCGCACCGGGTGATCTGGTCGGTGC
CCGTCGCGCTCGCCGTCCTCGTCGCGCTCGGGCGGACGCAGGATCTGCGCGCGGCGCTGCGCTCGCCGCGGATGCTTCTG
ATGGCGGCGGCGACGGCCGCGCTCATCTCGGTCAACTGGGGGATCTATGTCTGGGCCATCGGCGCGGGACACGCGCTCGA
CACGGCGCTCGGCTATTACATCAACCCGCTGTTCAGCGTCTTTCTCGGCGCGGTGCTGCTGGGCGAGCGGCTGAACCGGC
TGCAGCTGGTGGCCATCGTGCTCGCGGTGGCGGCGGTCGTCGTGCTGACGGTCGAGGCGGGGCGGCTGCCCATCGTGGCC
ATCTCGCTGATGCTGACCTGGGGCTGCTACGCCTATCTCAAGAAGTCGCTGCCGATCGGGCCGAACCAGGGGTTCCTGCT
CGAGGTGCTGCTTCTGCTGCCGCCGGCGCTCGGCGTGCTGATCTGGGTGGAAGGGTCGGGGCAGGGGCATTTCCTGCACG
GAAGCCTCCCCGATCAGGCGCTTCTCCTCGGCACGGGCGTCGTCACGGCGGTGCCGCTGATGCTCTACGCAAACGGCGCG
AAGCTCCTGAAGCTCTCGACCATCGGCTTCCTGCAATATGTGGCGCCGACCCTGATCTTCCTGACGGCGGTCTTCGTCTT
CGGCGAGCCCTTCGGGCGGGCCGAGGCCATTGCCTTCCCGATGATCTGGGTGGCGCTGGTGATCTTCACGGTGGCGCTGG
TGCGCGCCACCCGGCGCTAG

Upstream 100 bases:

>100_bases
CGGCGATCCATCAGCAAACGCGATGGGAGACCGCACGAGAAGGGATTGGCGCCCGGCCGCGGGCTCCTGTAAGGCGGACG
GACTCTCCGAGGATGATCCG

Downstream 100 bases:

>100_bases
GCCTCGAGCGGGTCCTCGAGCCCGAACTGGGTCGGCGCCATCATCACGTCGGCGATGGTGAATTCGTCGAGCGTGTCCAT
GAAGGACGAGACCGCCTTGG

Product: RarD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MADATLPRNEDSPRGMAFALSAYLIWGFLPVYMKALSHIPAYEVVAHRVIWSVPVALAVLVALGRTQDLRAALRSPRMLL
MAAATAALISVNWGIYVWAIGAGHALDTALGYYINPLFSVFLGAVLLGERLNRLQLVAIVLAVAAVVVLTVEAGRLPIVA
ISLMLTWGCYAYLKKSLPIGPNQGFLLEVLLLLPPALGVLIWVEGSGQGHFLHGSLPDQALLLGTGVVTAVPLMLYANGA
KLLKLSTIGFLQYVAPTLIFLTAVFVFGEPFGRAEAIAFPMIWVALVIFTVALVRATRR

Sequences:

>Translated_299_residues
MADATLPRNEDSPRGMAFALSAYLIWGFLPVYMKALSHIPAYEVVAHRVIWSVPVALAVLVALGRTQDLRAALRSPRMLL
MAAATAALISVNWGIYVWAIGAGHALDTALGYYINPLFSVFLGAVLLGERLNRLQLVAIVLAVAAVVVLTVEAGRLPIVA
ISLMLTWGCYAYLKKSLPIGPNQGFLLEVLLLLPPALGVLIWVEGSGQGHFLHGSLPDQALLLGTGVVTAVPLMLYANGA
KLLKLSTIGFLQYVAPTLIFLTAVFVFGEPFGRAEAIAFPMIWVALVIFTVALVRATRR
>Mature_298_residues
ADATLPRNEDSPRGMAFALSAYLIWGFLPVYMKALSHIPAYEVVAHRVIWSVPVALAVLVALGRTQDLRAALRSPRMLLM
AAATAALISVNWGIYVWAIGAGHALDTALGYYINPLFSVFLGAVLLGERLNRLQLVAIVLAVAAVVVLTVEAGRLPIVAI
SLMLTWGCYAYLKKSLPIGPNQGFLLEVLLLLPPALGVLIWVEGSGQGHFLHGSLPDQALLLGTGVVTAVPLMLYANGAK
LLKLSTIGFLQYVAPTLIFLTAVFVFGEPFGRAEAIAFPMIWVALVIFTVALVRATRR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=291, Percent_Identity=38.1443298969072, Blast_Score=214, Evalue=6e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32110; Mature: 31979

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADATLPRNEDSPRGMAFALSAYLIWGFLPVYMKALSHIPAYEVVAHRVIWSVPVALAVL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VALGRTQDLRAALRSPRMLLMAAATAALISVNWGIYVWAIGAGHALDTALGYYINPLFSV
HHHCCCHHHHHHHCCCHHHHHHHHHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHH
FLGAVLLGERLNRLQLVAIVLAVAAVVVLTVEAGRLPIVAISLMLTWGCYAYLKKSLPIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PNQGFLLEVLLLLPPALGVLIWVEGSGQGHFLHGSLPDQALLLGTGVVTAVPLMLYANGA
CCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHCCCC
KLLKLSTIGFLQYVAPTLIFLTAVFVFGEPFGRAEAIAFPMIWVALVIFTVALVRATRR
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADATLPRNEDSPRGMAFALSAYLIWGFLPVYMKALSHIPAYEVVAHRVIWSVPVALAVL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VALGRTQDLRAALRSPRMLLMAAATAALISVNWGIYVWAIGAGHALDTALGYYINPLFSV
HHHCCCHHHHHHHCCCHHHHHHHHHHHHHEECCCEEEEEECCCHHHHHHHHHHHHHHHHH
FLGAVLLGERLNRLQLVAIVLAVAAVVVLTVEAGRLPIVAISLMLTWGCYAYLKKSLPIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PNQGFLLEVLLLLPPALGVLIWVEGSGQGHFLHGSLPDQALLLGTGVVTAVPLMLYANGA
CCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHCCCC
KLLKLSTIGFLQYVAPTLIFLTAVFVFGEPFGRAEAIAFPMIWVALVIFTVALVRATRR
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]