| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
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The map label for this gene is gsiB [H]
Identifier: 77465255
GI number: 77465255
Start: 304951
End: 306462
Strand: Reverse
Name: gsiB [H]
Synonym: RSP_3248
Alternate gene names: 77465255
Gene position: 306462-304951 (Counterclockwise)
Preceding gene: 77465256
Following gene: 77465251
Centisome position: 32.5
GC content: 62.96
Gene sequence:
>1512_bases ATGACAGGAAAATGGGCCCGCGTCGGCCTCATCGCGCTGAGCGTGACCCTCGGCCTCGGCAGCATCGCCGAAGCCGCGGG CGTGCTGACCATCGGCCGGCGCGAGGACGGCACCACCTTCGACCCGATCGCCACGGCGCAGAACGTGGATTTCTGGGTCT TCTCGAACGTCTATGACGTGCTCGTGCGCGTGGACAAGACCGGGACCAAGCTCGAGCCCGGTCTGGCCGAAAGCTGGGAG ATCTCGGAGGACGGGCTCACCTACACGTTCCATCTGCGCGACGCGAACTTCTCCGACGGCTCGCCCATCACCGCCGAGGA CGCGGCCTTCACGCTGCTGCGCATCCGCGACAGCGAACTGTCGCTCTGGTCGGACAGCTATGCGGTGATCGAAACTGCCG AGGCGACCGATCCGAAGACCCTCGTCGTCAAGCTGAAGACCCCCTCGGCGCCCTTCCTGTCCACCATGGCGATGCCCGCC GTCTCGATCCTGTCGAAGGCGGGCGTCGAAGCCATGGGCGAGGAGGCCTATGCCGAGAAGCCCGTGGCCTCGGGCGCCTT TACCGTCAAGGAATGGCGCCGCGGCGACCGGGTGATCCTGAAGAAGAACCCGGAATTCTGGCAAGCCGACCGGGTGAGCC TCGACGGGGTCGAATGGATCTCGATCCCCGACGACAACAGCCGGATGCTGAGCGTGCAGGCGGGCGAACTCGACGCCGCG ATCTTCGTGCCCTTCTCGCGGGTGGCGGAACTGAAGAAGGATACCAACCTCAAGGTCATGGTCGAGCCCTCGACGCGCGA GGACCATCTGCTCCTCAACCACGAGCACGAGCCACTGAACGATCCCAAGGTGCGCGAGGCGATCGATCTCGCCATCGACA AGCAGGCGATCGTCGACACGGTGACCTTCGGGCAGGCGCAGATCGCCAATTCCTACATCCCCGCCGGCGCGCTCTATCAC AACGACAACAACCTGCTGCGGCCCCACGACCCCGAGAAGGCCAAGGCGCTTCTGGCCGAGGCGGGTGTGTCCGACGTGAG CCTCGATTATGTGGTGAATGCGGGCAACGAGGTGGACGAGCAGATCGCCGTCCTCCTCCAGCAGCAGCTGGGTCAGGCCG GGATCACGGTCAATCTGCAGAAGATGGACCCAAGCATGACCTGGGACATGCTGGTGAATGGCGAATACGACCTGTCGGTC ATGTATTGGACGAACGACATCCTCGATCCCGACCAGAAGACCACCTTCGTTCTGGGTCACGACGTCAACATGAACTACAT GACGCGCTACGAAAACGACACGGTGAAGCAGCTCGTGGCCGATGCCCGGCTCGAGATGGACCCGGCCAAGCGCGAGGCGA TGTATACCGAGATCCAGGAACTGTCGAAGGCCGATACCCACTGGATCGACCTCTATTACAGCCCCTTCATCAACGTGACG CGTGCCAATATCGAGAACTTCAACCAGAACCCGCTGGGCCGCTTCTTCCTCGAGGATACGGTGAAGAACTGA
Upstream 100 bases:
>100_bases CGGCGCTGATCGCGGCCATCCCGAGCATCGACCCCGACCAGCCGCTGGCGGCCGCGATGCCCGACCCCAGAAGCCAGACC CAACAGGAAGGACTGCTCAC
Downstream 100 bases:
>100_bases GGCTCCGCCTCTGGCGGACCAAGGGGGTCGGCGCGGTGCGCCGGCCCCTTTTTTGGCTCAGACCCGGGCGTAGTCGATGC GCCGCGCGAGCCAGCAGCCG
Product: ABC peptide transporter, periplasmic binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MTGKWARVGLIALSVTLGLGSIAEAAGVLTIGRREDGTTFDPIATAQNVDFWVFSNVYDVLVRVDKTGTKLEPGLAESWE ISEDGLTYTFHLRDANFSDGSPITAEDAAFTLLRIRDSELSLWSDSYAVIETAEATDPKTLVVKLKTPSAPFLSTMAMPA VSILSKAGVEAMGEEAYAEKPVASGAFTVKEWRRGDRVILKKNPEFWQADRVSLDGVEWISIPDDNSRMLSVQAGELDAA IFVPFSRVAELKKDTNLKVMVEPSTREDHLLLNHEHEPLNDPKVREAIDLAIDKQAIVDTVTFGQAQIANSYIPAGALYH NDNNLLRPHDPEKAKALLAEAGVSDVSLDYVVNAGNEVDEQIAVLLQQQLGQAGITVNLQKMDPSMTWDMLVNGEYDLSV MYWTNDILDPDQKTTFVLGHDVNMNYMTRYENDTVKQLVADARLEMDPAKREAMYTEIQELSKADTHWIDLYYSPFINVT RANIENFNQNPLGRFFLEDTVKN
Sequences:
>Translated_503_residues MTGKWARVGLIALSVTLGLGSIAEAAGVLTIGRREDGTTFDPIATAQNVDFWVFSNVYDVLVRVDKTGTKLEPGLAESWE ISEDGLTYTFHLRDANFSDGSPITAEDAAFTLLRIRDSELSLWSDSYAVIETAEATDPKTLVVKLKTPSAPFLSTMAMPA VSILSKAGVEAMGEEAYAEKPVASGAFTVKEWRRGDRVILKKNPEFWQADRVSLDGVEWISIPDDNSRMLSVQAGELDAA IFVPFSRVAELKKDTNLKVMVEPSTREDHLLLNHEHEPLNDPKVREAIDLAIDKQAIVDTVTFGQAQIANSYIPAGALYH NDNNLLRPHDPEKAKALLAEAGVSDVSLDYVVNAGNEVDEQIAVLLQQQLGQAGITVNLQKMDPSMTWDMLVNGEYDLSV MYWTNDILDPDQKTTFVLGHDVNMNYMTRYENDTVKQLVADARLEMDPAKREAMYTEIQELSKADTHWIDLYYSPFINVT RANIENFNQNPLGRFFLEDTVKN >Mature_502_residues TGKWARVGLIALSVTLGLGSIAEAAGVLTIGRREDGTTFDPIATAQNVDFWVFSNVYDVLVRVDKTGTKLEPGLAESWEI SEDGLTYTFHLRDANFSDGSPITAEDAAFTLLRIRDSELSLWSDSYAVIETAEATDPKTLVVKLKTPSAPFLSTMAMPAV SILSKAGVEAMGEEAYAEKPVASGAFTVKEWRRGDRVILKKNPEFWQADRVSLDGVEWISIPDDNSRMLSVQAGELDAAI FVPFSRVAELKKDTNLKVMVEPSTREDHLLLNHEHEPLNDPKVREAIDLAIDKQAIVDTVTFGQAQIANSYIPAGALYHN DNNLLRPHDPEKAKALLAEAGVSDVSLDYVVNAGNEVDEQIAVLLQQQLGQAGITVNLQKMDPSMTWDMLVNGEYDLSVM YWTNDILDPDQKTTFVLGHDVNMNYMTRYENDTVKQLVADARLEMDPAKREAMYTEIQELSKADTHWIDLYYSPFINVTR ANIENFNQNPLGRFFLEDTVKN
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=506, Percent_Identity=29.4466403162055, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI1787762, Length=496, Percent_Identity=28.4274193548387, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1789966, Length=526, Percent_Identity=26.615969581749, Blast_Score=173, Evalue=3e-44, Organism=Escherichia coli, GI1787495, Length=434, Percent_Identity=26.4976958525346, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI1787551, Length=473, Percent_Identity=24.7357293868922, Blast_Score=132, Evalue=7e-32, Organism=Escherichia coli, GI1789397, Length=491, Percent_Identity=25.8655804480652, Blast_Score=128, Evalue=7e-31, Organism=Escherichia coli, GI1789887, Length=343, Percent_Identity=26.2390670553936, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI87081878, Length=488, Percent_Identity=23.155737704918, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI87082063, Length=374, Percent_Identity=21.9251336898396, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 55958; Mature: 55826
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGKWARVGLIALSVTLGLGSIAEAAGVLTIGRREDGTTFDPIATAQNVDFWVFSNVYDV CCCCCHHHEEEEEEEHHCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHEE LVRVDKTGTKLEPGLAESWEISEDGLTYTFHLRDANFSDGSPITAEDAAFTLLRIRDSEL EEEECCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCC SLWSDSYAVIETAEATDPKTLVVKLKTPSAPFLSTMAMPAVSILSKAGVEAMGEEAYAEK EEECCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCC PVASGAFTVKEWRRGDRVILKKNPEFWQADRVSLDGVEWISIPDDNSRMLSVQAGELDAA CCCCCCEEHHHHCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCEE IFVPFSRVAELKKDTNLKVMVEPSTREDHLLLNHEHEPLNDPKVREAIDLAIDKQAIVDT EECCHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHEE VTFGQAQIANSYIPAGALYHNDNNLLRPHDPEKAKALLAEAGVSDVSLDYVVNAGNEVDE EECCCHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHH QIAVLLQQQLGQAGITVNLQKMDPSMTWDMLVNGEYDLSVMYWTNDILDPDQKTTFVLGH HHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEE DVNMNYMTRYENDTVKQLVADARLEMDPAKREAMYTEIQELSKADTHWIDLYYSPFINVT CCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE RANIENFNQNPLGRFFLEDTVKN ECCCCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure TGKWARVGLIALSVTLGLGSIAEAAGVLTIGRREDGTTFDPIATAQNVDFWVFSNVYDV CCCCHHHEEEEEEEHHCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHEE LVRVDKTGTKLEPGLAESWEISEDGLTYTFHLRDANFSDGSPITAEDAAFTLLRIRDSEL EEEECCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCC SLWSDSYAVIETAEATDPKTLVVKLKTPSAPFLSTMAMPAVSILSKAGVEAMGEEAYAEK EEECCCEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCC PVASGAFTVKEWRRGDRVILKKNPEFWQADRVSLDGVEWISIPDDNSRMLSVQAGELDAA CCCCCCEEHHHHCCCCEEEEECCCCCCCCCCEEECCEEEEECCCCCCEEEEEECCCCCEE IFVPFSRVAELKKDTNLKVMVEPSTREDHLLLNHEHEPLNDPKVREAIDLAIDKQAIVDT EECCHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHEE VTFGQAQIANSYIPAGALYHNDNNLLRPHDPEKAKALLAEAGVSDVSLDYVVNAGNEVDE EECCCHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHH QIAVLLQQQLGQAGITVNLQKMDPSMTWDMLVNGEYDLSVMYWTNDILDPDQKTTFVLGH HHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEE DVNMNYMTRYENDTVKQLVADARLEMDPAKREAMYTEIQELSKADTHWIDLYYSPFINVT CCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE RANIENFNQNPLGRFFLEDTVKN ECCCCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA