| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ywbL [H]
Identifier: 77461691
GI number: 77461691
Start: 6137427
End: 6139322
Strand: Reverse
Name: ywbL [H]
Synonym: Pfl01_5470
Alternate gene names: 77461691
Gene position: 6139322-6137427 (Counterclockwise)
Preceding gene: 77461697
Following gene: 77461690
Centisome position: 95.35
GC content: 65.3
Gene sequence:
>1896_bases ATGACTGCCGCGTCCCGATTTCTGGCCTGGCTGGTGTTCCCGTTGTGCGCCCTGAGCAGCTTCAATCTGCTGGCCGACAC CGTGGAAGGCGCGCCGCAAGCGCTGCACCTGCTCGATTACATCAGCGCCGATTACCCGCCGACGGTTGAGGCAGGCAAGG TCATTGACGACGGCGAATACCGCGAGCAGCTGGAATTCACCCAAGTGCTGCAAGGGCTGATCGCCGGCCTGCCGGCCAAG CCGGAAAAAGTGGCGCTGGAGCAGGGCGTCACTGCCTTGCACGCCGCGATCACGGCGAAACAGGATGGCGCGGACGTCGC CCGTCAGGCCCGGCAACTGGGGGCGAAACTGGCGGTGGCCTATGAAGTCAGCCAGGCCCCGATCATCACGCCTGATCCGA CCCGTGGTGCGCCGCTCTACGCGCAAAACTGCTCGGTGTGCCACGGCGACGCGGGTGCCGGCGACGGCCCGGCAGGTCTC GGCATGACGCCGGCGCCAGCCAATCTGCGCGATACTGCGCGGATGGATCACCTGAGCCTGTACGCGATCTACAGCACCCT CGGCCAGGGCGTCGAAGGCACTGACATGCCAGCCTTTGCCGATCAACTGGACGACCGTCAGCGCTGGGATCTGGCGACCT ATATCGCGCAGTTCAGCGCCGATCCGGCCACGGCCAAATCCGACAAGACCTACAATATCGCCGACCTGGCCCGCCAGACC CCGGCCGAAGTGCAGGCCGCCGAAGGCCCTGAAGCCGCGGCGATCTTCCGTGTACAACGGGCGCAGCCGCCGCAGGTCAA ACGCGGCCCGGCGCAGTTGCTCGACTACACTGCCGCGACGCTGGACAAGAGCCTGGCGGCGTACCGCGCCGGTGAACACG ATCAGGCTTACGACCTGTCGGTGGCGGCGTATCTGGAAGGCTTCGAACTGGTCGAGAGCTCGCTGGACAACGTCGACGCC AACGTGCGCAAGGACACCGAAAAATCCCTGATGGCCTATCGGCAATCGCTGCAGGACGGCTTGCCGGTCGAGCAGGCCGA ACAGCGTCTTGACGCGGCCAAGGCCAAACTCAAGGAGTCTGCCGGCCTGTTGGGCAGCGATGGATTGAGCTGGTCGCTGA GCTACATTTCCGGTCTGCTGATTCTGCTGCGCGAAGGCCTGGAAGCGATTCTGGTGCTGGCGGCGATCCTCGCGTTCCTG CGCAACACCGGCCAGCAATCGGCGGTGCGCAGCGTCAACGTCGGCTGGGGGCTGGCGCTGCTGGCTGGCCTGGGAACCTG GGCGCTGGCGGCCTATGTGATCGATGTCAGCGGCTCCCAGCGTGAGCTGTTGGAAGGCGCCACGGCGCTGTTCGCCAGCG TCATGGTGTTGTGGCTCGGGGTGTGGATGCACGACCGTCGGCACGCGGCGGCCTGGCAGGATTACATCAAGCAGAGTCTG GTTGGCGGAGGCGGGCGTTTCGGGTTTGCGATCCTGGCATTCTTCTCGGTGTACCGCGAACTGTTCGAAGTGATCCTGTT CTACGAAACCCTGTGGCTGCAGGCCGGTCCCGCCGGGCATAACGCGGTACTTGCTGGTGGTGCGACGGCATTGGTGTTGC TGTTCGGTCTGGCGTGGGTGATCCTGCGCGGCTCGGCGAAACTGCCGCTGGCGCTGTTCTTCAGCATCAACGCAGCGCTG CTGTGCGCGTTGTCGGTGGTGTTTGCCGGCCACGGCGTGAAGGCGCTGCAGGAAGCCGGGATCTTCGGTACCCGGCCGGT GGCGTTCTTCGATTTCGACTGGCTGGGGATTCACGCCGATGCGTATTCGCTGACGGCGCAGGCCGTGGCGATCGCGGCGA TCATCGTGCTGTACGGTCGCAGTCGGGTGGCTGAAAAGCGCCGAGTGGCGGCTTGA
Upstream 100 bases:
>100_bases GTGGGCGGTGGCCATGTGCCGGGTATTGGAGAGAAAGCTTGAGGGAATCGCGCTCGAAGTGAACAATATGTAACTTCGCA TTTCCACTTGAGACTCATTC
Downstream 100 bases:
>100_bases GATGATGCGCGTATGGATCGATGCCGACGCTTGCCCGAAGATGGCCAAGGAGTTGGTGGTCAAGTTCGCCCTCAAGCGCC GCTTCGAAGTGGTGCTGGTG
Product: cytochrome c, class I
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MTAASRFLAWLVFPLCALSSFNLLADTVEGAPQALHLLDYISADYPPTVEAGKVIDDGEYREQLEFTQVLQGLIAGLPAK PEKVALEQGVTALHAAITAKQDGADVARQARQLGAKLAVAYEVSQAPIITPDPTRGAPLYAQNCSVCHGDAGAGDGPAGL GMTPAPANLRDTARMDHLSLYAIYSTLGQGVEGTDMPAFADQLDDRQRWDLATYIAQFSADPATAKSDKTYNIADLARQT PAEVQAAEGPEAAAIFRVQRAQPPQVKRGPAQLLDYTAATLDKSLAAYRAGEHDQAYDLSVAAYLEGFELVESSLDNVDA NVRKDTEKSLMAYRQSLQDGLPVEQAEQRLDAAKAKLKESAGLLGSDGLSWSLSYISGLLILLREGLEAILVLAAILAFL RNTGQQSAVRSVNVGWGLALLAGLGTWALAAYVIDVSGSQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYIKQSL VGGGGRFGFAILAFFSVYRELFEVILFYETLWLQAGPAGHNAVLAGGATALVLLFGLAWVILRGSAKLPLALFFSINAAL LCALSVVFAGHGVKALQEAGIFGTRPVAFFDFDWLGIHADAYSLTAQAVAIAAIIVLYGRSRVAEKRRVAA
Sequences:
>Translated_631_residues MTAASRFLAWLVFPLCALSSFNLLADTVEGAPQALHLLDYISADYPPTVEAGKVIDDGEYREQLEFTQVLQGLIAGLPAK PEKVALEQGVTALHAAITAKQDGADVARQARQLGAKLAVAYEVSQAPIITPDPTRGAPLYAQNCSVCHGDAGAGDGPAGL GMTPAPANLRDTARMDHLSLYAIYSTLGQGVEGTDMPAFADQLDDRQRWDLATYIAQFSADPATAKSDKTYNIADLARQT PAEVQAAEGPEAAAIFRVQRAQPPQVKRGPAQLLDYTAATLDKSLAAYRAGEHDQAYDLSVAAYLEGFELVESSLDNVDA NVRKDTEKSLMAYRQSLQDGLPVEQAEQRLDAAKAKLKESAGLLGSDGLSWSLSYISGLLILLREGLEAILVLAAILAFL RNTGQQSAVRSVNVGWGLALLAGLGTWALAAYVIDVSGSQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYIKQSL VGGGGRFGFAILAFFSVYRELFEVILFYETLWLQAGPAGHNAVLAGGATALVLLFGLAWVILRGSAKLPLALFFSINAAL LCALSVVFAGHGVKALQEAGIFGTRPVAFFDFDWLGIHADAYSLTAQAVAIAAIIVLYGRSRVAEKRRVAA >Mature_630_residues TAASRFLAWLVFPLCALSSFNLLADTVEGAPQALHLLDYISADYPPTVEAGKVIDDGEYREQLEFTQVLQGLIAGLPAKP EKVALEQGVTALHAAITAKQDGADVARQARQLGAKLAVAYEVSQAPIITPDPTRGAPLYAQNCSVCHGDAGAGDGPAGLG MTPAPANLRDTARMDHLSLYAIYSTLGQGVEGTDMPAFADQLDDRQRWDLATYIAQFSADPATAKSDKTYNIADLARQTP AEVQAAEGPEAAAIFRVQRAQPPQVKRGPAQLLDYTAATLDKSLAAYRAGEHDQAYDLSVAAYLEGFELVESSLDNVDAN VRKDTEKSLMAYRQSLQDGLPVEQAEQRLDAAKAKLKESAGLLGSDGLSWSLSYISGLLILLREGLEAILVLAAILAFLR NTGQQSAVRSVNVGWGLALLAGLGTWALAAYVIDVSGSQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYIKQSLV GGGGRFGFAILAFFSVYRELFEVILFYETLWLQAGPAGHNAVLAGGATALVLLFGLAWVILRGSAKLPLALFFSINAALL CALSVVFAGHGVKALQEAGIFGTRPVAFFDFDWLGIHADAYSLTAQAVAIAAIIVLYGRSRVAEKRRVAA
Specific function: Unknown
COG id: COG0672
COG function: function code P; High-affinity Fe2+/Pb2+ permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxidase-dependent Fe transporter (OFeT) (TC 9.A.10.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005217 - InterPro: IPR004923 [H]
Pfam domain/function: PF03239 FTR1 [H]
EC number: NA
Molecular weight: Translated: 67352; Mature: 67220
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAASRFLAWLVFPLCALSSFNLLADTVEGAPQALHLLDYISADYPPTVEAGKVIDDGEY CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH REQLEFTQVLQGLIAGLPAKPEKVALEQGVTALHAAITAKQDGADVARQARQLGAKLAVA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHEEEE YEVSQAPIITPDPTRGAPLYAQNCSVCHGDAGAGDGPAGLGMTPAPANLRDTARMDHLSL EEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH YAIYSTLGQGVEGTDMPAFADQLDDRQRWDLATYIAQFSADPATAKSDKTYNIADLARQT HHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC PAEVQAAEGPEAAAIFRVQRAQPPQVKRGPAQLLDYTAATLDKSLAAYRAGEHDQAYDLS CCCCCCCCCCCHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH VAAYLEGFELVESSLDNVDANVRKDTEKSLMAYRQSLQDGLPVEQAEQRLDAAKAKLKES HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AGLLGSDGLSWSLSYISGLLILLREGLEAILVLAAILAFLRNTGQQSAVRSVNVGWGLAL CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH LAGLGTWALAAYVIDVSGSQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYIKQSL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH VGGGGRFGFAILAFFSVYRELFEVILFYETLWLQAGPAGHNAVLAGGATALVLLFGLAWV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHH ILRGSAKLPLALFFSINAALLCALSVVFAGHGVKALQEAGIFGTRPVAFFDFDWLGIHAD HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEECCEEEEECC AYSLTAQAVAIAAIIVLYGRSRVAEKRRVAA HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC >Mature Secondary Structure TAASRFLAWLVFPLCALSSFNLLADTVEGAPQALHLLDYISADYPPTVEAGKVIDDGEY CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH REQLEFTQVLQGLIAGLPAKPEKVALEQGVTALHAAITAKQDGADVARQARQLGAKLAVA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHEEEE YEVSQAPIITPDPTRGAPLYAQNCSVCHGDAGAGDGPAGLGMTPAPANLRDTARMDHLSL EEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH YAIYSTLGQGVEGTDMPAFADQLDDRQRWDLATYIAQFSADPATAKSDKTYNIADLARQT HHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC PAEVQAAEGPEAAAIFRVQRAQPPQVKRGPAQLLDYTAATLDKSLAAYRAGEHDQAYDLS CCCCCCCCCCCHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH VAAYLEGFELVESSLDNVDANVRKDTEKSLMAYRQSLQDGLPVEQAEQRLDAAKAKLKES HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AGLLGSDGLSWSLSYISGLLILLREGLEAILVLAAILAFLRNTGQQSAVRSVNVGWGLAL CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHH LAGLGTWALAAYVIDVSGSQRELLEGATALFASVMVLWLGVWMHDRRHAAAWQDYIKQSL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH VGGGGRFGFAILAFFSVYRELFEVILFYETLWLQAGPAGHNAVLAGGATALVLLFGLAWV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHH ILRGSAKLPLALFFSINAALLCALSVVFAGHGVKALQEAGIFGTRPVAFFDFDWLGIHAD HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEECCEEEEECC AYSLTAQAVAIAAIIVLYGRSRVAEKRRVAA HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]