| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ygfF [H]
Identifier: 77458751
GI number: 77458751
Start: 2889380
End: 2890126
Strand: Direct
Name: ygfF [H]
Synonym: Pfl01_2526
Alternate gene names: 77458751
Gene position: 2889380-2890126 (Clockwise)
Preceding gene: 77458750
Following gene: 77458752
Centisome position: 44.88
GC content: 61.85
Gene sequence:
>747_bases ATGGATAAAGTCATTGTGATCACCGGCGGTGGTCGTGGAATTGGCGCCGCCACCGCGCTGTTGGCTGCCGAGCAAGGCTA TCGGATCTGCATCAATTACCAGACGGACGAACAGGCCGCTCACCACGTGCTCGACCAGGTCCGTGAACGCGGCGCCACGG CCATCGCCGTGCGCGCCGATGTCAGTATCGAAGACGAAGTGATCGCGCTGTTCAACCGAGTCGACAGCGAACTGGGCCGC GTCACCGCCTTGGTGAACAACGCCGGCACCGTCGGGCACAAGTCGCGGGTCGACGAAATGTCCGAATTCCGCATCCTCAA AATCATGAAAACCAACGTCCTGGCGCCGATCCTCTGCGCCAAGCACGCGATCCTGCGCATGTCGCCCAAACACGGCGGGC AGGGCGGCAGCATCGTCAACGTTTCTTCGGTCGCTGCGCGGCTGGGATCGCCCAATGAATACGTTGATTACGCGGCCTCA AAAGGTGCGCTGGATACGTTCACCATCGGTCTGTCCAAGGAAGTGGCGGGCGAAGGGATTCGGGTGAATGCGGTGCGTCC GGGTTACATCTATACCGATTTCCACGCGTTGAGTGGCGACCCCGATCGGGTCAGCAAGCTGGAGTCGGCGATCCCGATGG CCCGGGGCGGGCGGCCGGACGAAGTGGCGGAGGCAATTGTCTGGTTGCTGTCGGACAAAGCCTCGTATGCCACCGGGACT TTTGTCGATCTCGGCGGCGGACGTTAG
Upstream 100 bases:
>100_bases TTGGCGGTGAGCTGAGCCGCTAATCGCAGGTCATGCAAAACCCTGCAATGACGGTTATTCTTGCCCCGACTGTTACGTGT GTATCGGGGGAAAGGCCAGC
Downstream 100 bases:
>100_bases ACCGGACCACGTGAAACCACCTGTTTTATCGTTGTCAACCTGTTGGTTCTGACAGTTTACGCGGCTTGCCGCCGCGCCTA GATTAGGCGCGGCGGACTTA
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MDKVIVITGGGRGIGAATALLAAEQGYRICINYQTDEQAAHHVLDQVRERGATAIAVRADVSIEDEVIALFNRVDSELGR VTALVNNAGTVGHKSRVDEMSEFRILKIMKTNVLAPILCAKHAILRMSPKHGGQGGSIVNVSSVAARLGSPNEYVDYAAS KGALDTFTIGLSKEVAGEGIRVNAVRPGYIYTDFHALSGDPDRVSKLESAIPMARGGRPDEVAEAIVWLLSDKASYATGT FVDLGGGR
Sequences:
>Translated_248_residues MDKVIVITGGGRGIGAATALLAAEQGYRICINYQTDEQAAHHVLDQVRERGATAIAVRADVSIEDEVIALFNRVDSELGR VTALVNNAGTVGHKSRVDEMSEFRILKIMKTNVLAPILCAKHAILRMSPKHGGQGGSIVNVSSVAARLGSPNEYVDYAAS KGALDTFTIGLSKEVAGEGIRVNAVRPGYIYTDFHALSGDPDRVSKLESAIPMARGGRPDEVAEAIVWLLSDKASYATGT FVDLGGGR >Mature_248_residues MDKVIVITGGGRGIGAATALLAAEQGYRICINYQTDEQAAHHVLDQVRERGATAIAVRADVSIEDEVIALFNRVDSELGR VTALVNNAGTVGHKSRVDEMSEFRILKIMKTNVLAPILCAKHAILRMSPKHGGQGGSIVNVSSVAARLGSPNEYVDYAAS KGALDTFTIGLSKEVAGEGIRVNAVRPGYIYTDFHALSGDPDRVSKLESAIPMARGGRPDEVAEAIVWLLSDKASYATGT FVDLGGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=38.4615384615385, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI59889578, Length=200, Percent_Identity=32, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=29.4820717131474, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=29.9212598425197, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=28.4, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=29.6442687747036, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI210032110, Length=195, Percent_Identity=30.2564102564103, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=29.7435897435897, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=28.740157480315, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=26.9076305220884, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=28.1124497991968, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=54.6938775510204, Blast_Score=284, Evalue=4e-78, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=35.0806451612903, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=32.5301204819277, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=32.3886639676113, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=33.0612244897959, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.8943089430894, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=31.0756972111554, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=32.9365079365079, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=33.0543933054393, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=29.8387096774194, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=28.1368821292776, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787891, Length=244, Percent_Identity=28.2786885245902, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=26.5060240963855, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=24.8, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=34.0080971659919, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=30.2325581395349, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=31.8367346938775, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=32.0754716981132, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71994600, Length=264, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=30.4347826086957, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=32.520325203252, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.0344827586207, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=31.5589353612167, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=28.6792452830189, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=29.1187739463602, Blast_Score=90, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=30.4182509505703, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=32.421875, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=32.5490196078431, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=28.3582089552239, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=31.4393939393939, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=31.5789473684211, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=30.5660377358491, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=31.5789473684211, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=28.4584980237154, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17544670, Length=257, Percent_Identity=28.7937743190661, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=30.9433962264151, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.8804780876494, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=30.2681992337165, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.0861423220974, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=27.6, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203115, Length=243, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=241, Percent_Identity=28.6307053941909, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=35.3174603174603, Blast_Score=119, Evalue=3e-27, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=34.3873517786561, Blast_Score=114, Evalue=8e-26, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=36.078431372549, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=33.0677290836653, Blast_Score=104, Evalue=4e-23, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=33.4661354581673, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24644337, Length=118, Percent_Identity=39.8305084745763, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=28.5106382978723, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571387, Length=244, Percent_Identity=29.9180327868852, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21358495, Length=230, Percent_Identity=28.695652173913, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26275; Mature: 26275
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKVIVITGGGRGIGAATALLAAEQGYRICINYQTDEQAAHHVLDQVRERGATAIAVRAD CCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEC VSIEDEVIALFNRVDSELGRVTALVNNAGTVGHKSRVDEMSEFRILKIMKTNVLAPILCA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KHAILRMSPKHGGQGGSIVNVSSVAARLGSPNEYVDYAASKGALDTFTIGLSKEVAGEGI HHHHEEECCCCCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCHHHCCCCE RVNAVRPGYIYTDFHALSGDPDRVSKLESAIPMARGGRPDEVAEAIVWLLSDKASYATGT EEEEECCCEEEEEEEECCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCCCCCC FVDLGGGR EEECCCCC >Mature Secondary Structure MDKVIVITGGGRGIGAATALLAAEQGYRICINYQTDEQAAHHVLDQVRERGATAIAVRAD CCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEC VSIEDEVIALFNRVDSELGRVTALVNNAGTVGHKSRVDEMSEFRILKIMKTNVLAPILCA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KHAILRMSPKHGGQGGSIVNVSSVAARLGSPNEYVDYAASKGALDTFTIGLSKEVAGEGI HHHHEEECCCCCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCHHHCCCCE RVNAVRPGYIYTDFHALSGDPDRVSKLESAIPMARGGRPDEVAEAIVWLLSDKASYATGT EEEEECCCEEEEEEEECCCCHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCCCCCC FVDLGGGR EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]