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The map label for this gene is yciR [C]

Identifier: 77458750

GI number: 77458750

Start: 2887213

End: 2889294

Strand: Direct

Name: yciR [C]

Synonym: Pfl01_2525

Alternate gene names: 77458750

Gene position: 2887213-2889294 (Clockwise)

Preceding gene: 77458749

Following gene: 77458751

Centisome position: 44.84

GC content: 61.86

Gene sequence:

>2082_bases
ATGCTCATCGGTAGCTATTCCTTCACGCTGGTTTTCATTTCGCTGTGTGTGGCGATCCTCGCTTCCTACACCGCGCTCGA
TCTCACCGGGCGCATTGCCACTGCCAAGGGCCGCGCCGTGCATTTATGGACGGCCGGCGGCGCGTTTGCCATGGGCATCG
GCGTCTGGTCGATGCACTTCATTGGCATGCTGGCGTTCAAGCTGCCGATCAGCCTCGGTTACGACATTTCAATCACCGCG
CTCTCATTGCTGATCGCCGTGCTGTCCTGCGGTTTTGCCCTGTGGCTGGTCAGTCAGCCGAAACTGCCGGCCTGGCAACT
GGCCTTTGGCGCGTTGATCATGGGCGCCGGCATCAGCGCCATGCATTACACCGGCATGGCCGCGATGCGCATGCAGCCGG
GCATCGACTACGATCCGACGCTGTTTGGCGCCTCGCTGTTGATCGCCGTTGGCGCCTCGGCAGCAGCGTTGTGGATTGCC
TTCCGTCTGCGTCAGCATTCGCCTTACGTGCGGCTGTTCCGTGCCGGGGCGGCGATTGTCATGGGCGTGGCGATTGTCGG
CATGCACTACACCGGGATGGCGGCGGCGCGGTTTCCCGACGGCAGTTTCTGTGGTGCGGCGCTCAGTGGCCTGAACGGCA
ACGGCCTCGACAATCTGGTGCTGATCACCACGCTGGCGGTGCTGGCCATCGCGCTGCTGACCTCGATTCTCGATGCGCGT
CTGGAAGCCCGCACGGCTGATCTGGCCCATTCGTTGACCGTGGCCAACCGCGAACTCACCCAACTGGCCCTGCACGACCC
CTTGACCGGCCTGCCGAACCGGATGTTGCTGGACGACCGGATCAATCAGGCGATGAAAAAGGTCAATGAGCAGGGCGGCT
GCTTTGCGCTGATGTTTATCGATCTGGACGGCTTCAAACCGGTCAATGACGCTTTCGGTCACCACATGGGGGACCAGTTG
CTGCGCGAAGTGGCGGTGCGCTTGCGTGAAGATTTGCGCAGCCTCGACACGCTGGCGCGGATCGGCGGCGACGAGTTTGT
CCTGCTGGTGCGCCTGGCCGAACCCAACGATGCACTGGGCCTGGCGGCACGTCAGGTCGGCCTGATCGCACAGTCGTTCC
GGGTCGCCGAACATGACCTGCAGATTTCTGCCAGCGTCGGCATCGCCCTGTACCCCGGCAACGGGGAGAGCGCCCAGGAA
CTGTTGATGAACGCCGACGCCGCGATGTACCACGCCAAGGGCGGCGGCAAGAATGGTTACAGCTTCTTCGACGTTTCGAT
GAACAGTAACGCGCGCAAGCAATTGCAACTGTTGCAGGACCTGCGGGCAGCACTGGAGCACAGCGAGTTTTGTCTGCATT
ACCAACCCAAATTCCACGCCGCTGACGGTCACCCGGTCGGTGCCGAAGCGTTGTTGCGCTGGGAGCATCCAGTTCACGGC
ATGCTGATGCCGGACACGTTCATCGATCTGGCAGAGAAAACCGGTCTGATCATTCCGATTGGCGAGTGGGTGCTCAACGA
AGCCTGCCGGCAGATGCGCGAGTGGTATGTACTGGGCCACACCGAATGGCGGATCGCGGTGAACCTGTCAGCGTTGCAGT
TCTGCCACGCCGGACTGGTGCGCAGCGTAGCCAAGGCCCTGGCCACCCACCATTTGCCGGCCAACAGCCTGACCCTGGAA
ATCACCGAAACCACCGCCATGAGCGACGCCGATGCGAGCATGACGGTGTTGCAGGAGCTGTCCGACATGGGCGTCGATCT
GTCCATCGACGATTTTGGCACGGGCTATTCCAGCCTGATGTATCTCAAGCGCCTGCCGGCCAACGAGCTGAAGATTGATC
GCGGTTTCGTCCGTGATCTGGAACATGACAGCGACGATGCGGCGATCGTTTCGGCAATCGTCGCCCTGGGTCAGGCGCTC
GGTCTGCGCATCGTGGCTGAAGGAGTGGAGACCGACTCGCAACAGGACTTCCTCACGCAACTGGGCTGCGATTCGCTGCA
AGGTTATCTGCTCGGTCACCCGATGCCGGCGGATCGCTTTCTGCAGAATGTCGCGCGCGGCAAACCATTGGCGGTGAGCT
GA

Upstream 100 bases:

>100_bases
ATTACTTTGTCAGTGCGTTCTTCCGCGCAATCAGTACAATCGGCGCCTTTGGCCCCGCTGAGAACGGACGCAGTACGGCG
GGGTGGTCACGAGAATCCTC

Downstream 100 bases:

>100_bases
GCCGCTAATCGCAGGTCATGCAAAACCCTGCAATGACGGTTATTCTTGCCCCGACTGTTACGTGTGTATCGGGGGAAAGG
CCAGCATGGATAAAGTCATT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 693; Mature: 693

Protein sequence:

>693_residues
MLIGSYSFTLVFISLCVAILASYTALDLTGRIATAKGRAVHLWTAGGAFAMGIGVWSMHFIGMLAFKLPISLGYDISITA
LSLLIAVLSCGFALWLVSQPKLPAWQLAFGALIMGAGISAMHYTGMAAMRMQPGIDYDPTLFGASLLIAVGASAAALWIA
FRLRQHSPYVRLFRAGAAIVMGVAIVGMHYTGMAAARFPDGSFCGAALSGLNGNGLDNLVLITTLAVLAIALLTSILDAR
LEARTADLAHSLTVANRELTQLALHDPLTGLPNRMLLDDRINQAMKKVNEQGGCFALMFIDLDGFKPVNDAFGHHMGDQL
LREVAVRLREDLRSLDTLARIGGDEFVLLVRLAEPNDALGLAARQVGLIAQSFRVAEHDLQISASVGIALYPGNGESAQE
LLMNADAAMYHAKGGGKNGYSFFDVSMNSNARKQLQLLQDLRAALEHSEFCLHYQPKFHAADGHPVGAEALLRWEHPVHG
MLMPDTFIDLAEKTGLIIPIGEWVLNEACRQMREWYVLGHTEWRIAVNLSALQFCHAGLVRSVAKALATHHLPANSLTLE
ITETTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQAL
GLRIVAEGVETDSQQDFLTQLGCDSLQGYLLGHPMPADRFLQNVARGKPLAVS

Sequences:

>Translated_693_residues
MLIGSYSFTLVFISLCVAILASYTALDLTGRIATAKGRAVHLWTAGGAFAMGIGVWSMHFIGMLAFKLPISLGYDISITA
LSLLIAVLSCGFALWLVSQPKLPAWQLAFGALIMGAGISAMHYTGMAAMRMQPGIDYDPTLFGASLLIAVGASAAALWIA
FRLRQHSPYVRLFRAGAAIVMGVAIVGMHYTGMAAARFPDGSFCGAALSGLNGNGLDNLVLITTLAVLAIALLTSILDAR
LEARTADLAHSLTVANRELTQLALHDPLTGLPNRMLLDDRINQAMKKVNEQGGCFALMFIDLDGFKPVNDAFGHHMGDQL
LREVAVRLREDLRSLDTLARIGGDEFVLLVRLAEPNDALGLAARQVGLIAQSFRVAEHDLQISASVGIALYPGNGESAQE
LLMNADAAMYHAKGGGKNGYSFFDVSMNSNARKQLQLLQDLRAALEHSEFCLHYQPKFHAADGHPVGAEALLRWEHPVHG
MLMPDTFIDLAEKTGLIIPIGEWVLNEACRQMREWYVLGHTEWRIAVNLSALQFCHAGLVRSVAKALATHHLPANSLTLE
ITETTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQAL
GLRIVAEGVETDSQQDFLTQLGCDSLQGYLLGHPMPADRFLQNVARGKPLAVS
>Mature_693_residues
MLIGSYSFTLVFISLCVAILASYTALDLTGRIATAKGRAVHLWTAGGAFAMGIGVWSMHFIGMLAFKLPISLGYDISITA
LSLLIAVLSCGFALWLVSQPKLPAWQLAFGALIMGAGISAMHYTGMAAMRMQPGIDYDPTLFGASLLIAVGASAAALWIA
FRLRQHSPYVRLFRAGAAIVMGVAIVGMHYTGMAAARFPDGSFCGAALSGLNGNGLDNLVLITTLAVLAIALLTSILDAR
LEARTADLAHSLTVANRELTQLALHDPLTGLPNRMLLDDRINQAMKKVNEQGGCFALMFIDLDGFKPVNDAFGHHMGDQL
LREVAVRLREDLRSLDTLARIGGDEFVLLVRLAEPNDALGLAARQVGLIAQSFRVAEHDLQISASVGIALYPGNGESAQE
LLMNADAAMYHAKGGGKNGYSFFDVSMNSNARKQLQLLQDLRAALEHSEFCLHYQPKFHAADGHPVGAEALLRWEHPVHG
MLMPDTFIDLAEKTGLIIPIGEWVLNEACRQMREWYVLGHTEWRIAVNLSALQFCHAGLVRSVAKALATHHLPANSLTLE
ITETTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQAL
GLRIVAEGVETDSQQDFLTQLGCDSLQGYLLGHPMPADRFLQNVARGKPLAVS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=38.2629107981221, Blast_Score=299, Evalue=4e-82,
Organism=Escherichia coli, GI87081921, Length=446, Percent_Identity=35.8744394618834, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=31.9540229885057, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=36.2549800796813, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI87082096, Length=529, Percent_Identity=27.0321361058601, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=34.4262295081967, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1786507, Length=283, Percent_Identity=31.8021201413428, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=33.8842975206612, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1788849, Length=424, Percent_Identity=27.5943396226415, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=32.1138211382114, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=34.0425531914894, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI1787055, Length=450, Percent_Identity=25.5555555555556, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788381, Length=428, Percent_Identity=27.3364485981308, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=32.9268292682927, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=33.5403726708075, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787262, Length=200, Percent_Identity=29.5, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=33.5106382978723, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=32.183908045977, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=34.7560975609756, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1786584, Length=250, Percent_Identity=25.6, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=33.5329341317365, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=28.021978021978, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=27.6470588235294, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081974, Length=108, Percent_Identity=30.5555555555556, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74705; Mature: 74705

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGSYSFTLVFISLCVAILASYTALDLTGRIATAKGRAVHLWTAGGAFAMGIGVWSMHF
CEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHH
IGMLAFKLPISLGYDISITALSLLIAVLSCGFALWLVSQPKLPAWQLAFGALIMGAGISA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHCCCHH
MHYTGMAAMRMQPGIDYDPTLFGASLLIAVGASAAALWIAFRLRQHSPYVRLFRAGAAIV
HHHHCHHHEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MGVAIVGMHYTGMAAARFPDGSFCGAALSGLNGNGLDNLVLITTLAVLAIALLTSILDAR
HHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEARTADLAHSLTVANRELTQLALHDPLTGLPNRMLLDDRINQAMKKVNEQGGCFALMFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
DLDGFKPVNDAFGHHMGDQLLREVAVRLREDLRSLDTLARIGGDEFVLLVRLAEPNDALG
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH
LAARQVGLIAQSFRVAEHDLQISASVGIALYPGNGESAQELLMNADAAMYHAKGGGKNGY
HHHHHHHHHHHHHHHHHHCEEEEEECEEEEECCCCCHHHHHHHCCCHHEEECCCCCCCCC
SFFDVSMNSNARKQLQLLQDLRAALEHSEFCLHYQPKFHAADGHPVGAEALLRWEHPVHG
EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCHHHHEEECCCCCC
MLMPDTFIDLAEKTGLIIPIGEWVLNEACRQMREWYVLGHTEWRIAVNLSALQFCHAGLV
EECCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHEEEECCCEEEEEEEHHHHHHHHHHHH
RSVAKALATHHLPANSLTLEITETTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLM
HHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
YLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETDSQQDFLTQ
HHHHCCCCCEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHH
LGCDSLQGYLLGHPMPADRFLQNVARGKPLAVS
HCCHHHCCCEECCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLIGSYSFTLVFISLCVAILASYTALDLTGRIATAKGRAVHLWTAGGAFAMGIGVWSMHF
CEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHH
IGMLAFKLPISLGYDISITALSLLIAVLSCGFALWLVSQPKLPAWQLAFGALIMGAGISA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEEEECCCCCCHHHHHHHHHHHHCCCHH
MHYTGMAAMRMQPGIDYDPTLFGASLLIAVGASAAALWIAFRLRQHSPYVRLFRAGAAIV
HHHHCHHHEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
MGVAIVGMHYTGMAAARFPDGSFCGAALSGLNGNGLDNLVLITTLAVLAIALLTSILDAR
HHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEARTADLAHSLTVANRELTQLALHDPLTGLPNRMLLDDRINQAMKKVNEQGGCFALMFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
DLDGFKPVNDAFGHHMGDQLLREVAVRLREDLRSLDTLARIGGDEFVLLVRLAEPNDALG
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH
LAARQVGLIAQSFRVAEHDLQISASVGIALYPGNGESAQELLMNADAAMYHAKGGGKNGY
HHHHHHHHHHHHHHHHHHCEEEEEECEEEEECCCCCHHHHHHHCCCHHEEECCCCCCCCC
SFFDVSMNSNARKQLQLLQDLRAALEHSEFCLHYQPKFHAADGHPVGAEALLRWEHPVHG
EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCHHHHEEECCCCCC
MLMPDTFIDLAEKTGLIIPIGEWVLNEACRQMREWYVLGHTEWRIAVNLSALQFCHAGLV
EECCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHEEEECCCEEEEEEEHHHHHHHHHHHH
RSVAKALATHHLPANSLTLEITETTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLM
HHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
YLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETDSQQDFLTQ
HHHHCCCCCEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHH
LGCDSLQGYLLGHPMPADRFLQNVARGKPLAVS
HCCHHHCCCEECCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]