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The map label for this gene is exbD [H]

Identifier: 77458724

GI number: 77458724

Start: 2858611

End: 2859036

Strand: Direct

Name: exbD [H]

Synonym: Pfl01_2499

Alternate gene names: 77458724

Gene position: 2858611-2859036 (Clockwise)

Preceding gene: 77458723

Following gene: 77458725

Centisome position: 44.4

GC content: 62.44

Gene sequence:

>426_bases
ATGGCGTCCGTAAATGCCTCCCACGACGATGACGAAGATGCCGCAGTGGACAGCATCAACATCACGCCTCTGGTGGACGT
GCTGATGGTGGTGCTGGTGATGTTCATCCTCACCGCCACCGCGCAGGTCTCCGGGATCCAGATCAACCTGCCCAAGGCCA
GCGCCGCGGTGTCGTTGTCCGAAGCCAAGACCAAGGCGATTTCGGTCAACGACGGCGGCCAGGTGTTCCTCGACGCCTAT
CCGGTCACGTTGCCTGAACTGGAAGAGCGCCTGCGGATCGAGAAGGCGCAGAACCCGGACTTCCCGGTGATCGTGCGCGG
CGACGCCACGGTGCAGTACCAGAAAGTCATCGAAGTGCTGGATCTGCTGCGCCGGCTCGAACTGTCCCAGGTCGGTCTCG
TTACCGGCAAACCGACGCAGGGCTGA

Upstream 100 bases:

>100_bases
CCCGTCTGGCGGAGATGCACGGCGAAGGCCAGTCCAGTGAAGCGGCGCATCAGCGCGGCCATCACGCCAACCAATCCGTA
CCGGCCTGAGGAGCACTGAC

Downstream 100 bases:

>100_bases
GTGATGACTGCACAACTGCCAATCGAGCCTTTGCCGGTGAAGAAGTCGCCACTGCGTTACGTGAAGTGGGGCGCCGGGCT
GCTGCTGGGTGCCGTCGCGG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MASVNASHDDDEDAAVDSINITPLVDVLMVVLVMFILTATAQVSGIQINLPKASAAVSLSEAKTKAISVNDGGQVFLDAY
PVTLPELEERLRIEKAQNPDFPVIVRGDATVQYQKVIEVLDLLRRLELSQVGLVTGKPTQG

Sequences:

>Translated_141_residues
MASVNASHDDDEDAAVDSINITPLVDVLMVVLVMFILTATAQVSGIQINLPKASAAVSLSEAKTKAISVNDGGQVFLDAY
PVTLPELEERLRIEKAQNPDFPVIVRGDATVQYQKVIEVLDLLRRLELSQVGLVTGKPTQG
>Mature_140_residues
ASVNASHDDDEDAAVDSINITPLVDVLMVVLVMFILTATAQVSGIQINLPKASAAVSLSEAKTKAISVNDGGQVFLDAYP
VTLPELEERLRIEKAQNPDFPVIVRGDATVQYQKVIEVLDLLRRLELSQVGLVTGKPTQG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=27.4193548387097, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15141; Mature: 15009

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASVNASHDDDEDAAVDSINITPLVDVLMVVLVMFILTATAQVSGIQINLPKASAAVSLS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECC
EAKTKAISVNDGGQVFLDAYPVTLPELEERLRIEKAQNPDFPVIVRGDATVQYQKVIEVL
CCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
DLLRRLELSQVGLVTGKPTQG
HHHHHHHHHHCCEECCCCCCC
>Mature Secondary Structure 
ASVNASHDDDEDAAVDSINITPLVDVLMVVLVMFILTATAQVSGIQINLPKASAAVSLS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECC
EAKTKAISVNDGGQVFLDAYPVTLPELEERLRIEKAQNPDFPVIVRGDATVQYQKVIEVL
CCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHH
DLLRRLELSQVGLVTGKPTQG
HHHHHHHHHHCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]