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The map label for this gene is yciR [C]

Identifier: 77457550

GI number: 77457550

Start: 1496919

End: 1498268

Strand: Direct

Name: yciR [C]

Synonym: Pfl01_1323

Alternate gene names: 77457550

Gene position: 1496919-1498268 (Clockwise)

Preceding gene: 77457549

Following gene: 77457551

Centisome position: 23.25

GC content: 63.33

Gene sequence:

>1350_bases
ATGGAAAGCCGAGATTCCGCGCCGCTGGCGAGTTACATCGATCTGTTGCTGGACGCCGTTTGCGCGGTCGACAAGCAAGG
TCGCTTCGTTTTTGTCAGTGCGGCCAGCGAGCGGATTCTCGGCTACAGGCCTGACGAACTGATCGGCCAGTCGATGATCG
ACTACGTCTACCCGGCCGACCGTGAGCGCACCCTGGCCGCCGCGAGCGACATCATGGGCGGCGAGCCCAAGCACAATTTC
GAAAACCGCTACGTGCGCAAGGACGGCAGCGTCGTGCACATCCTGTGGTCGGCGCGCTGGTCGGAAGTCGATCAACTGCG
CATCGCCGTGGCCCGGGACATCACCGAACGGAAACTCGCCGAATCCCGTCAGGCGGCGTTGTACGCGATCTCCGAAGCGG
CGCATGCGGCGGAGGATCTGCTGGCGCTGTTCAAGCGCATTCACCTGATCATCGGCGAGTGGCTGCCGGCGCTGAATTTC
TCCGTGGCGCTGTACGACGAACACTGTGCGCAACTGAATTTTCCCTATCACGTCGACGATGACGAGTTGCAACCGGAACA
ACCCGGCACCGTCACCGGGCGCCTGTGTGCGGAAGTGATCCGCAGCCGCCAGCCAATCCTCCTGACCCCGGATTGCCCCC
ACGCGCCGCCGGAGTTCGCCGCGCTGGTAGCCGGCCAGCAATCGCCGTGCTGGCTGGGTGTGCCGCTGAGTTCGAAAGAC
CGCACCATCGGCGCGCTGATCGTCAAAAGCCTGGCCGGCGGCGAGCGCTACACCGAACGGGACAAGGAACTGCTGCAATA
CGTCTGCGCCCAGGTCGCCACCGCCATCGAACGCCAGCAACTGCACGCCCGCCTGCGGCGCATGGCGCAGTATGACCAAC
TGACCCAGTTGCCCAACCGCGAACTGCTGCGCGACCGACTCAAGGCTGCGCTGAACCATGCACGGGAACAGTCCGGGCAC
ATGGCGCTGCTGTATGTCGATCTGGATCGTTTCAAACAGGTCAACGACACGTTTGGCCATGGGGTCGGCGACATGCTGTT
GCAGGCGGTGGCCAACCGGCTCAAGGGCTGCGTGCGCGAGACCGACACCGTGGCGCGGATCGGCGGCGACGAGTTCGTGG
TGCTGTTGCACAGCGTCCACGCCGCCGACGATGCCGACAGTGTCGCGGAAAAAATCCGACAGGTACTGGTGCAACCCATG
CGCCTGGACGGGCACAACCTGCACATCGAACCGAGTATCGGCGTGGCCCGTTATCCCGAGCATGGTGATGAGGAACAGCA
ACTGTTTCGTCACGCCGACCAGGTGATGTACGCCGCCAAACGGCAGAATCATAAAAGGCTGGACAGCTGA

Upstream 100 bases:

>100_bases
GGCTGATACCGAACAAGGCTTGAAAACAGTCGCAGGGATGCGAGGTCGAGGTCATGGATGGTTGAACAGTGCTGCATTGC
CCGGACACCCACGCTGAACC

Downstream 100 bases:

>100_bases
TCGGCGGGTCACCGTTCGTCGCGGCGACGGCAACTTTTCTAAACCTTTGGCAGTCAGGAAATTCTCAATCTAGGCGGGCA
CCTGCTCGCTTACGATCAAT

Product: PAS/PAC and GAF sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MESRDSAPLASYIDLLLDAVCAVDKQGRFVFVSAASERILGYRPDELIGQSMIDYVYPADRERTLAAASDIMGGEPKHNF
ENRYVRKDGSVVHILWSARWSEVDQLRIAVARDITERKLAESRQAALYAISEAAHAAEDLLALFKRIHLIIGEWLPALNF
SVALYDEHCAQLNFPYHVDDDELQPEQPGTVTGRLCAEVIRSRQPILLTPDCPHAPPEFAALVAGQQSPCWLGVPLSSKD
RTIGALIVKSLAGGERYTERDKELLQYVCAQVATAIERQQLHARLRRMAQYDQLTQLPNRELLRDRLKAALNHAREQSGH
MALLYVDLDRFKQVNDTFGHGVGDMLLQAVANRLKGCVRETDTVARIGGDEFVVLLHSVHAADDADSVAEKIRQVLVQPM
RLDGHNLHIEPSIGVARYPEHGDEEQQLFRHADQVMYAAKRQNHKRLDS

Sequences:

>Translated_449_residues
MESRDSAPLASYIDLLLDAVCAVDKQGRFVFVSAASERILGYRPDELIGQSMIDYVYPADRERTLAAASDIMGGEPKHNF
ENRYVRKDGSVVHILWSARWSEVDQLRIAVARDITERKLAESRQAALYAISEAAHAAEDLLALFKRIHLIIGEWLPALNF
SVALYDEHCAQLNFPYHVDDDELQPEQPGTVTGRLCAEVIRSRQPILLTPDCPHAPPEFAALVAGQQSPCWLGVPLSSKD
RTIGALIVKSLAGGERYTERDKELLQYVCAQVATAIERQQLHARLRRMAQYDQLTQLPNRELLRDRLKAALNHAREQSGH
MALLYVDLDRFKQVNDTFGHGVGDMLLQAVANRLKGCVRETDTVARIGGDEFVVLLHSVHAADDADSVAEKIRQVLVQPM
RLDGHNLHIEPSIGVARYPEHGDEEQQLFRHADQVMYAAKRQNHKRLDS
>Mature_449_residues
MESRDSAPLASYIDLLLDAVCAVDKQGRFVFVSAASERILGYRPDELIGQSMIDYVYPADRERTLAAASDIMGGEPKHNF
ENRYVRKDGSVVHILWSARWSEVDQLRIAVARDITERKLAESRQAALYAISEAAHAAEDLLALFKRIHLIIGEWLPALNF
SVALYDEHCAQLNFPYHVDDDELQPEQPGTVTGRLCAEVIRSRQPILLTPDCPHAPPEFAALVAGQQSPCWLGVPLSSKD
RTIGALIVKSLAGGERYTERDKELLQYVCAQVATAIERQQLHARLRRMAQYDQLTQLPNRELLRDRLKAALNHAREQSGH
MALLYVDLDRFKQVNDTFGHGVGDMLLQAVANRLKGCVRETDTVARIGGDEFVVLLHSVHAADDADSVAEKIRQVLVQPM
RLDGHNLHIEPSIGVARYPEHGDEEQQLFRHADQVMYAAKRQNHKRLDS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=36.9942196531792, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=194, Percent_Identity=34.020618556701, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=37.3563218390805, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081977, Length=226, Percent_Identity=30.0884955752212, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=34.3373493975904, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787262, Length=235, Percent_Identity=28.5106382978723, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=29.5698924731183, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=35.672514619883, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87082007, Length=170, Percent_Identity=33.5294117647059, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=30.2325581395349, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=34.3558282208589, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081974, Length=173, Percent_Identity=27.1676300578035, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=28.6516853932584, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081921, Length=175, Percent_Identity=25.1428571428571, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 50441; Mature: 50441

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRDSAPLASYIDLLLDAVCAVDKQGRFVFVSAASERILGYRPDELIGQSMIDYVYPAD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
RERTLAAASDIMGGEPKHNFENRYVRKDGSVVHILWSARWSEVDQLRIAVARDITERKLA
CCHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
ESRQAALYAISEAAHAAEDLLALFKRIHLIIGEWLPALNFSVALYDEHCAQLNFPYHVDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCCCCCCC
DELQPEQPGTVTGRLCAEVIRSRQPILLTPDCPHAPPEFAALVAGQQSPCWLGVPLSSKD
CCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCC
RTIGALIVKSLAGGERYTERDKELLQYVCAQVATAIERQQLHARLRRMAQYDQLTQLPNR
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ELLRDRLKAALNHAREQSGHMALLYVDLDRFKQVNDTFGHGVGDMLLQAVANRLKGCVRE
HHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TDTVARIGGDEFVVLLHSVHAADDADSVAEKIRQVLVQPMRLDGHNLHIEPSIGVARYPE
HHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
HGDEEQQLFRHADQVMYAAKRQNHKRLDS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MESRDSAPLASYIDLLLDAVCAVDKQGRFVFVSAASERILGYRPDELIGQSMIDYVYPAD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
RERTLAAASDIMGGEPKHNFENRYVRKDGSVVHILWSARWSEVDQLRIAVARDITERKLA
CCHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
ESRQAALYAISEAAHAAEDLLALFKRIHLIIGEWLPALNFSVALYDEHCAQLNFPYHVDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCCCCCCC
DELQPEQPGTVTGRLCAEVIRSRQPILLTPDCPHAPPEFAALVAGQQSPCWLGVPLSSKD
CCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCC
RTIGALIVKSLAGGERYTERDKELLQYVCAQVATAIERQQLHARLRRMAQYDQLTQLPNR
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ELLRDRLKAALNHAREQSGHMALLYVDLDRFKQVNDTFGHGVGDMLLQAVANRLKGCVRE
HHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TDTVARIGGDEFVVLLHSVHAADDADSVAEKIRQVLVQPMRLDGHNLHIEPSIGVARYPE
HHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
HGDEEQQLFRHADQVMYAAKRQNHKRLDS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]