Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is 77457551
Identifier: 77457551
GI number: 77457551
Start: 1498618
End: 1499121
Strand: Direct
Name: 77457551
Synonym: Pfl01_1324
Alternate gene names: NA
Gene position: 1498618-1499121 (Clockwise)
Preceding gene: 77457550
Following gene: 77457553
Centisome position: 23.28
GC content: 60.12
Gene sequence:
>504_bases ATGAGCCGGATGGCCACCCGAGTACGCCACATCAGTTTTGTCAGCCTGTTGGGGTTGTTCGCCAGCAGCGCGTTTGCCCA GTCGCCCGCCGACTTCATCAACGAAGCCTCGGCCAAAGGCATGGCCGACATCGAGGCCAGTCGTCTGGCACACAGCAAGG CCGAGTCCAAAGAGGTCAAGGACTACACCATCCAGGTCATCAACGACCGCACCACCGCCAATCAGCATCTGGCGAAAATC GCCAAGAAACTGGACCTGCCGGTGGCGCCTCGCGAAGAAGTCGCCGACAAGGCCAAGACATTGATGCCGGAGGTCAAAGA GGGCGCCAGCTTCGATCAGGCCTACGCTGCCAGCCAAGTCAAAGCCACCGAAGAAGCCATCGAACAGATCCAGCAGGAGG CTCAGACCACCGACGTGCCGGAGATCAAGGCGTTTGCCGACGAGACCCTGCCAAAACTGCAGAGTCATCTGGAAATGGCC CGAGCCCTTCAGGCCAGTCGCTGA
Upstream 100 bases:
>100_bases CAAGCCTGCTCAGAAATCGAAGTAGTCGGCGAAGGTTGTTTTGATTGAGAGGCGGGGGCGCAAGCTCCCGCTTGAATCTG CACAGAAGGAGGGCGCGACC
Downstream 100 bases:
>100_bases ATCCGCAGCAATGAAAACGGCGCTTTTTTAGCGCCGTTTTTTTTTGCCTGTCAGCATTCATTCAGGTCCTGCTTCGGCTT GCTCTTGTCCCCCAGACCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein-Like Protein; Lipoprotein; Exported Protein
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MSRMATRVRHISFVSLLGLFASSAFAQSPADFINEASAKGMADIEASRLAHSKAESKEVKDYTIQVINDRTTANQHLAKI AKKLDLPVAPREEVADKAKTLMPEVKEGASFDQAYAASQVKATEEAIEQIQQEAQTTDVPEIKAFADETLPKLQSHLEMA RALQASR
Sequences:
>Translated_167_residues MSRMATRVRHISFVSLLGLFASSAFAQSPADFINEASAKGMADIEASRLAHSKAESKEVKDYTIQVINDRTTANQHLAKI AKKLDLPVAPREEVADKAKTLMPEVKEGASFDQAYAASQVKATEEAIEQIQQEAQTTDVPEIKAFADETLPKLQSHLEMA RALQASR >Mature_166_residues SRMATRVRHISFVSLLGLFASSAFAQSPADFINEASAKGMADIEASRLAHSKAESKEVKDYTIQVINDRTTANQHLAKIA KKLDLPVAPREEVADKAKTLMPEVKEGASFDQAYAASQVKATEEAIEQIQQEAQTTDVPEIKAFADETLPKLQSHLEMAR ALQASR
Specific function: Unknown
COG id: COG3652
COG function: function code S; Predicted outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18285; Mature: 18154
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRMATRVRHISFVSLLGLFASSAFAQSPADFINEASAKGMADIEASRLAHSKAESKEVK CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DYTIQVINDRTTANQHLAKIAKKLDLPVAPREEVADKAKTLMPEVKEGASFDQAYAASQV HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH KATEEAIEQIQQEAQTTDVPEIKAFADETLPKLQSHLEMARALQASR HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRMATRVRHISFVSLLGLFASSAFAQSPADFINEASAKGMADIEASRLAHSKAESKEVK CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DYTIQVINDRTTANQHLAKIAKKLDLPVAPREEVADKAKTLMPEVKEGASFDQAYAASQV HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH KATEEAIEQIQQEAQTTDVPEIKAFADETLPKLQSHLEMARALQASR HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA