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The map label for this gene is ywbI [H]

Identifier: 77457540

GI number: 77457540

Start: 1488152

End: 1489060

Strand: Direct

Name: ywbI [H]

Synonym: Pfl01_1313

Alternate gene names: 77457540

Gene position: 1488152-1489060 (Clockwise)

Preceding gene: 77457538

Following gene: 77457541

Centisome position: 23.11

GC content: 64.69

Gene sequence:

>909_bases
ATGCTGCAAAAAAGCCTGATCCGCCGCCTCGACCTGATCACCCTGCAACTGTTCGTCGCCGTCCACGAGGAAGGCACGCT
GACCCGTGCCGCGTCCCGCGAGGCGATTGCCGTGTCGGCGGCGAGCAAGCGCTTGATGGAGCTGGAGGAAGCGCTGGGCA
TCAGCCTGTTCGTGCGTCAGGCCAAGGGCATGACCCTGACCCCGGCCGGCGAAACCCTGTTGCACCACGCCCGGCAGATG
TTGTTCAACGTCGAGAAAATGGGCCTTGAACTGGGCGAGCACAGCCACGGTGTGCGCGGCTATGTGCGGATGCTGGCGAA
CCTGTCGGCGATCATTCAGTTTCTCCCCGAAGACCTGCGCGATTTCACCGCGCACCAGCCGCAGGTCAAGACCGATCTGG
AAGAGCGGCCCAGCGCCGGCGTGGTTCAGGGCGTGCTCGATGGCGTGGCGGATCTTGGCATCTGCTCCAGCGACAGCGAC
ATCAAAGGCCTGCACAGCGTGCGCTATCGCCGGGACAAACTGGTGGTGGTGATGTTGCCCGAGCATCCGTTGGCGGTGCG
CGAATCCGTGGCGTTCAGTGAAACCCTCGACAGCGATTACGTCGGCCTGCACGCCGCCAGTTCGATCAACATGCGCACCC
ACGCTGCCGCGCGTCAGGCCGGCAAAGTGTTGCGCATCCGCATTCATGTGCCGGGCTTCGATGCCGTGTGCCGGATGGTG
CAGGCCAACATGGGCATCGGCATCCTGCCGCAGCGGGCTTATGAGTTGTTCGGTCGGGCGCTGGGGCTGCAGGCGGTGCC
GCTGACCGATGGCTGGTCGGATCGTGACTTGCTCGTGGTGGTGCGTGACGAGGCCGGGTTGTCGCCGGTGAGCCGGATCC
TGTTCGAGCATTTGCGCGCAGCCAGCTGA

Upstream 100 bases:

>100_bases
AAGGCAATGCCAGTGTTGAATACAAGGCAATTGAGTGTCTGCACGGGGCGCAACCCGGCTATCCTGCCGGGATCAACGAA
CCCACGTTATCGAGCTTGCC

Downstream 100 bases:

>100_bases
GCGTTCGCGTTTGGCGAACGGCCGTTGCCGAGTGACGGCTGGATCGCAGCCATGACGTTCCTCTAGCCTTGGCCGCAATT
CCAAGAACAAGAGGTACCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MLQKSLIRRLDLITLQLFVAVHEEGTLTRAASREAIAVSAASKRLMELEEALGISLFVRQAKGMTLTPAGETLLHHARQM
LFNVEKMGLELGEHSHGVRGYVRMLANLSAIIQFLPEDLRDFTAHQPQVKTDLEERPSAGVVQGVLDGVADLGICSSDSD
IKGLHSVRYRRDKLVVVMLPEHPLAVRESVAFSETLDSDYVGLHAASSINMRTHAAARQAGKVLRIRIHVPGFDAVCRMV
QANMGIGILPQRAYELFGRALGLQAVPLTDGWSDRDLLVVVRDEAGLSPVSRILFEHLRAAS

Sequences:

>Translated_302_residues
MLQKSLIRRLDLITLQLFVAVHEEGTLTRAASREAIAVSAASKRLMELEEALGISLFVRQAKGMTLTPAGETLLHHARQM
LFNVEKMGLELGEHSHGVRGYVRMLANLSAIIQFLPEDLRDFTAHQPQVKTDLEERPSAGVVQGVLDGVADLGICSSDSD
IKGLHSVRYRRDKLVVVMLPEHPLAVRESVAFSETLDSDYVGLHAASSINMRTHAAARQAGKVLRIRIHVPGFDAVCRMV
QANMGIGILPQRAYELFGRALGLQAVPLTDGWSDRDLLVVVRDEAGLSPVSRILFEHLRAAS
>Mature_302_residues
MLQKSLIRRLDLITLQLFVAVHEEGTLTRAASREAIAVSAASKRLMELEEALGISLFVRQAKGMTLTPAGETLLHHARQM
LFNVEKMGLELGEHSHGVRGYVRMLANLSAIIQFLPEDLRDFTAHQPQVKTDLEERPSAGVVQGVLDGVADLGICSSDSD
IKGLHSVRYRRDKLVVVMLPEHPLAVRESVAFSETLDSDYVGLHAASSINMRTHAAARQAGKVLRIRIHVPGFDAVCRMV
QANMGIGILPQRAYELFGRALGLQAVPLTDGWSDRDLLVVVRDEAGLSPVSRILFEHLRAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=24.0418118466899, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787806, Length=282, Percent_Identity=23.758865248227, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790262, Length=293, Percent_Identity=28.6689419795222, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=236, Percent_Identity=26.6949152542373, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786713, Length=251, Percent_Identity=29.4820717131474, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081904, Length=204, Percent_Identity=32.3529411764706, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=27.0161290322581, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787530, Length=217, Percent_Identity=24.8847926267281, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=24.8275862068966, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=243, Percent_Identity=26.3374485596708, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=293, Percent_Identity=22.5255972696246, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=24.1803278688525, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788481, Length=270, Percent_Identity=27.4074074074074, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33162; Mature: 33162

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQKSLIRRLDLITLQLFVAVHEEGTLTRAASREAIAVSAASKRLMELEEALGISLFVRQ
CCHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGMTLTPAGETLLHHARQMLFNVEKMGLELGEHSHGVRGYVRMLANLSAIIQFLPEDLR
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DFTAHQPQVKTDLEERPSAGVVQGVLDGVADLGICSSDSDIKGLHSVRYRRDKLVVVMLP
HHHCCCCCHHCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEC
EHPLAVRESVAFSETLDSDYVGLHAASSINMRTHAAARQAGKVLRIRIHVPGFDAVCRMV
CCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
QANMGIGILPQRAYELFGRALGLQAVPLTDGWSDRDLLVVVRDEAGLSPVSRILFEHLRA
HHCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
AS
CC
>Mature Secondary Structure
MLQKSLIRRLDLITLQLFVAVHEEGTLTRAASREAIAVSAASKRLMELEEALGISLFVRQ
CCHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGMTLTPAGETLLHHARQMLFNVEKMGLELGEHSHGVRGYVRMLANLSAIIQFLPEDLR
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DFTAHQPQVKTDLEERPSAGVVQGVLDGVADLGICSSDSDIKGLHSVRYRRDKLVVVMLP
HHHCCCCCHHCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEC
EHPLAVRESVAFSETLDSDYVGLHAASSINMRTHAAARQAGKVLRIRIHVPGFDAVCRMV
CCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
QANMGIGILPQRAYELFGRALGLQAVPLTDGWSDRDLLVVVRDEAGLSPVSRILFEHLRA
HHCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
AS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]