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The map label for this gene is oprD [H]

Identifier: 77457041

GI number: 77457041

Start: 959660

End: 961075

Strand: Reverse

Name: oprD [H]

Synonym: Pfl01_0814

Alternate gene names: 77457041

Gene position: 961075-959660 (Counterclockwise)

Preceding gene: 77457042

Following gene: 77457040

Centisome position: 14.93

GC content: 60.66

Gene sequence:

>1416_bases
ATGAAACTGAGCAATACCGCGATACTGGCCTTGGCCATCAGCAGCATCACCGCCACGGCTTACGCGGAAACCCAAAGCCA
GGCGTTCACTCCGGTGACCGTCAACGAGAAGAGCGCCCAGGCTGAAGCCACCGGCTTCCTCGAAGGTCAGTCGATCAGCG
GCTCGACCCGTAACTGGTACGCCAACGAACAACTGAAACGCGGCGGCAAGTTCACCTATCGCAAGGATGGCGTGGCCACT
CCGACCGACCGCCGTATCAACTGGGTGCAGGGCACCATCGTCAAGTACAACTCGGGCTTCACCGAAGGCACCGTCGGTTT
CAGCACCGAAGTGGCGGCGTACAACGCCATCGCGCTGGAGCGTGACCGCGAGAACCTGGCTTCCAACAACGGTGGCGCAC
CAGGCACCCGTCCAGGCGCGGGCAACAACCGTACCCTGACCCGTGAAGGCGGCGAAGCCCAGGGCCAGTGGAGCAAAGTC
GGCCTGGCCAACGTCAAGGCGCGTATCTCCAACACCACCCTGACCGCCGGCCGCATGAACTTCAGCAGCCCGCAGGTCGA
CGTGATCGGCAACCGTCCGCTGCCATCGAGCTTCGAAGGTATCGCGATCCACAGCGAAGAGCTGAACAACCTGTCCTTCG
ACCTGGCCTCGTTCGACCGCGTTTCGCCGCGAACCGAAGAAAGCCTGAGCAAATTCCGCTCCGAATATGGCGCGATCGAT
GCCGAAGCCGACCACGTTCACACCGGCGGCATCTCGTATCAGCCGTTCGCCAGCCTGACCACCAGCCTGTGGGGCACCCA
GGCCGAAGACCTGTGGAACCAGTACTACTTCGGCGCCACCCACGTGCTGGGTGACAGCTCGGTTCTGGCTCTGACCACCG
GTCTGAACTACTACAAGACCGTGGACGAAGGTAAGAAAAAACTCGGTGAAATCGACAACGACACCTACTCCCTGTCGTTC
GGTCTGACCCACCAGGCGCATACCCTGACCTTCTCCTACCAGGAAGTGAACGGTAACGAGTACTTCGACTACCTGCACGA
AACCAACGGCATCTACCTGGCCAACTCCCTGCTGTCGGACTTCAACGGCCCGAACGAGAAATCCTTCCAGGTGGCCTACG
GTCTGAACATGGCCGAATACGGCGTGCCAGGCCTGAAGTTCAACATCTACCAGGCCCGCGGCTGGGGCATCGACGGCACT
CACTACAAGGGTGGCGGCTACGATGGTGTGCAGTCGATGGATGGCGAGCACCACTATGAATACGGCATCGGCGCCTCTTA
TGCCGTACAGAGCGGTCCTCTGAAAGCCACTACCGTTCGTGCGACCTACACCGCGCACCGCGCCAGCGAAAACCAGGCTG
ACGGCAGCATCAACGAGTTCCGTCTGGTGACCACCGTTCCGTTCAACATCCTGTAA

Upstream 100 bases:

>100_bases
TGGCCTTTTGCAAACGTTTGCGATGTGTGAATGAGTTCTAAACCAATAACCGGCCAACCCAAAAAAGCCGGCATAAAAAG
AAAGTAAAGGAGCTTCACCC

Downstream 100 bases:

>100_bases
AAACGCCAGCCGACGGCTGACTCAGTGACGAGTCGGCCGTTCGGCTTTTTGTCTTCAACCGATTGCAGAGGGTTCTTGAT
GAAAATGCTTCCCCTACGTG

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MKLSNTAILALAISSITATAYAETQSQAFTPVTVNEKSAQAEATGFLEGQSISGSTRNWYANEQLKRGGKFTYRKDGVAT
PTDRRINWVQGTIVKYNSGFTEGTVGFSTEVAAYNAIALERDRENLASNNGGAPGTRPGAGNNRTLTREGGEAQGQWSKV
GLANVKARISNTTLTAGRMNFSSPQVDVIGNRPLPSSFEGIAIHSEELNNLSFDLASFDRVSPRTEESLSKFRSEYGAID
AEADHVHTGGISYQPFASLTTSLWGTQAEDLWNQYYFGATHVLGDSSVLALTTGLNYYKTVDEGKKKLGEIDNDTYSLSF
GLTHQAHTLTFSYQEVNGNEYFDYLHETNGIYLANSLLSDFNGPNEKSFQVAYGLNMAEYGVPGLKFNIYQARGWGIDGT
HYKGGGYDGVQSMDGEHHYEYGIGASYAVQSGPLKATTVRATYTAHRASENQADGSINEFRLVTTVPFNIL

Sequences:

>Translated_471_residues
MKLSNTAILALAISSITATAYAETQSQAFTPVTVNEKSAQAEATGFLEGQSISGSTRNWYANEQLKRGGKFTYRKDGVAT
PTDRRINWVQGTIVKYNSGFTEGTVGFSTEVAAYNAIALERDRENLASNNGGAPGTRPGAGNNRTLTREGGEAQGQWSKV
GLANVKARISNTTLTAGRMNFSSPQVDVIGNRPLPSSFEGIAIHSEELNNLSFDLASFDRVSPRTEESLSKFRSEYGAID
AEADHVHTGGISYQPFASLTTSLWGTQAEDLWNQYYFGATHVLGDSSVLALTTGLNYYKTVDEGKKKLGEIDNDTYSLSF
GLTHQAHTLTFSYQEVNGNEYFDYLHETNGIYLANSLLSDFNGPNEKSFQVAYGLNMAEYGVPGLKFNIYQARGWGIDGT
HYKGGGYDGVQSMDGEHHYEYGIGASYAVQSGPLKATTVRATYTAHRASENQADGSINEFRLVTTVPFNIL
>Mature_471_residues
MKLSNTAILALAISSITATAYAETQSQAFTPVTVNEKSAQAEATGFLEGQSISGSTRNWYANEQLKRGGKFTYRKDGVAT
PTDRRINWVQGTIVKYNSGFTEGTVGFSTEVAAYNAIALERDRENLASNNGGAPGTRPGAGNNRTLTREGGEAQGQWSKV
GLANVKARISNTTLTAGRMNFSSPQVDVIGNRPLPSSFEGIAIHSEELNNLSFDLASFDRVSPRTEESLSKFRSEYGAID
AEADHVHTGGISYQPFASLTTSLWGTQAEDLWNQYYFGATHVLGDSSVLALTTGLNYYKTVDEGKKKLGEIDNDTYSLSF
GLTHQAHTLTFSYQEVNGNEYFDYLHETNGIYLANSLLSDFNGPNEKSFQVAYGLNMAEYGVPGLKFNIYQARGWGIDGT
HYKGGGYDGVQSMDGEHHYEYGIGASYAVQSGPLKATTVRATYTAHRASENQADGSINEFRLVTTVPFNIL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 51216; Mature: 51216

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSNTAILALAISSITATAYAETQSQAFTPVTVNEKSAQAEATGFLEGQSISGSTRNWY
CCCCCEEEEEEEEHHHHHEEEECCCCCCCCEEEECCCCCCCHHHEEECCCCCCCCCCCCC
ANEQLKRGGKFTYRKDGVATPTDRRINWVQGTIVKYNSGFTEGTVGFSTEVAAYNAIALE
CCHHHHCCCCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHEEEEEEEE
RDRENLASNNGGAPGTRPGAGNNRTLTREGGEAQGQWSKVGLANVKARISNTTLTAGRMN
CCHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHEEEEECCCEEEECCCC
FSSPQVDVIGNRPLPSSFEGIAIHSEELNNLSFDLASFDRVSPRTEESLSKFRSEYGAID
CCCCCEEEEECCCCCCCCCCEEEEHHHCCCCEEEHHHCCCCCCCCHHHHHHHHHHHCCCC
AEADHVHTGGISYQPFASLTTSLWGTQAEDLWNQYYFGATHVLGDSSVLALTTGLNYYKT
CCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHH
VDEGKKKLGEIDNDTYSLSFGLTHQAHTLTFSYQEVNGNEYFDYLHETNGIYLANSLLSD
HHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHCCCCEEEEHHHHHH
FNGPNEKSFQVAYGLNMAEYGVPGLKFNIYQARGWGIDGTHYKGGGYDGVQSMDGEHHYE
CCCCCCCCEEEEECCCHHHHCCCCEEEEEEEECCCCCCCCEECCCCCCCHHCCCCCCCEE
YGIGASYAVQSGPLKATTVRATYTAHRASENQADGSINEFRLVTTVPFNIL
ECCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKLSNTAILALAISSITATAYAETQSQAFTPVTVNEKSAQAEATGFLEGQSISGSTRNWY
CCCCCEEEEEEEEHHHHHEEEECCCCCCCCEEEECCCCCCCHHHEEECCCCCCCCCCCCC
ANEQLKRGGKFTYRKDGVATPTDRRINWVQGTIVKYNSGFTEGTVGFSTEVAAYNAIALE
CCHHHHCCCCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHEEEEEEEE
RDRENLASNNGGAPGTRPGAGNNRTLTREGGEAQGQWSKVGLANVKARISNTTLTAGRMN
CCHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHEEEEECCCEEEECCCC
FSSPQVDVIGNRPLPSSFEGIAIHSEELNNLSFDLASFDRVSPRTEESLSKFRSEYGAID
CCCCCEEEEECCCCCCCCCCEEEEHHHCCCCEEEHHHCCCCCCCCHHHHHHHHHHHCCCC
AEADHVHTGGISYQPFASLTTSLWGTQAEDLWNQYYFGATHVLGDSSVLALTTGLNYYKT
CCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCEEEEEECCCHHHH
VDEGKKKLGEIDNDTYSLSFGLTHQAHTLTFSYQEVNGNEYFDYLHETNGIYLANSLLSD
HHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHCCCCEEEEHHHHHH
FNGPNEKSFQVAYGLNMAEYGVPGLKFNIYQARGWGIDGTHYKGGGYDGVQSMDGEHHYE
CCCCCCCCEEEEECCCHHHHCCCCEEEEEEEECCCCCCCCEECCCCCCCHHCCCCCCCEE
YGIGASYAVQSGPLKATTVRATYTAHRASENQADGSINEFRLVTTVPFNIL
ECCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]