Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 73542689

GI number: 73542689

Start: 3301251

End: 3302228

Strand: Reverse

Name: dppB [H]

Synonym: Reut_A3005

Alternate gene names: 73542689

Gene position: 3302228-3301251 (Counterclockwise)

Preceding gene: 73542690

Following gene: 73542688

Centisome position: 86.75

GC content: 60.94

Gene sequence:

>978_bases
ATGCTGGTTTTCATCATCCGGCGGCTGATGCAGAGCGTGGTTGTGCTCTTCATCATGTCGCTGCTCGTCTTTCTCGGCGT
CTTCGCCATCGGCAACCCGGTCGACATCCTGATCAATCCGCAAGCGGATCAGGAGGACATCCGGCGCACCATTGCCGCGC
TCGGGCTCGACAAACCGCTGTGGGAGCAGTATCTGGTCTTCTTGCAGAACGCCTTGCACGGCAACCTGGGGATCTCGTTC
GCTCATGGCACGCCCGCGCTCAAGCTGATCTTCGAGCGCATGCCTGCGACGCTTGAGCTGGCCGTATGCGCGATCCTGCT
GGCCATTGTTCTGGGCATTCCGCTGGGGCTTTGGGCAGGCCTGCGCCCGAATGGCATCGCCGGCAAGTCGATCATGACGG
TATCGATTCTCGGCTTTTCGCTACCGACGTTCTGGGTCGGGCTGATGCTGATCATGGTGTTCGCGGTGCAGCTCGGCTGG
CTGCCTTCGAACGGACGCGGCGAGACCGTGCGCGTGCTTGGCGTGCCGCTGAGCTTCCTGACCGTCGATGGCATCCGCCA
CCTGATCCTGCCGGCGGTGACGCTGTCGCTGCTCAATATCGCGATGGTGATTCGCCTGACGCGCGCGGGTACGCAGGAGG
CGATGCTGCAGGATTACGTGAAGTTTGCCCGTGCAAAGGGACTGTCCAATACGCGCATCGTCGGCGTGCATGTGCTCAAG
AACATCATGATCCCGATCGTGACGGTGATCGCACTGCAGTTCGGCTCTATCATCGCGTTCGCGATCGTGACCGAATCGAT
CTTCGCGTGGCCCGGCATGGGCAAGCTGATCATCGATTCGATCCAGCTGCTCGACCGGCCCGTCATCGTTGCGTACCTGA
TGGTGATCGTGACGCTGTTCATCCTGATCAATCTGGCGGTGGACATCCTCTACAGCGTGCTCGATCCGCGCGTGCGCATT
GCCGACAACAAGGGCTGA

Upstream 100 bases:

>100_bases
TAGTGCTCGCGGCAACGTACACCATGCGGGCCGTGCCTGGGACGGGCGCGGGGCTGGCCCGGCGCGACCCGCAGCGGTGT
GCGAAAGGAAGTGGTTCAAT

Downstream 100 bases:

>100_bases
GCCATGACTGCCGTAACCGCAGACAAACCGAAAGCCGCGCACGAGCAGACGCCGTTCCGCCGCTTCGCTGCCGAATTCCT
CTCCAGCAAGATTGCCGTGG

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLVFIIRRLMQSVVVLFIMSLLVFLGVFAIGNPVDILINPQADQEDIRRTIAALGLDKPLWEQYLVFLQNALHGNLGISF
AHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAGLRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVFAVQLGW
LPSNGRGETVRVLGVPLSFLTVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLFILINLAVDILYSVLDPRVRI
ADNKG

Sequences:

>Translated_325_residues
MLVFIIRRLMQSVVVLFIMSLLVFLGVFAIGNPVDILINPQADQEDIRRTIAALGLDKPLWEQYLVFLQNALHGNLGISF
AHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAGLRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVFAVQLGW
LPSNGRGETVRVLGVPLSFLTVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLFILINLAVDILYSVLDPRVRI
ADNKG
>Mature_325_residues
MLVFIIRRLMQSVVVLFIMSLLVFLGVFAIGNPVDILINPQADQEDIRRTIAALGLDKPLWEQYLVFLQNALHGNLGISF
AHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAGLRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVFAVQLGW
LPSNGRGETVRVLGVPLSFLTVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLFILINLAVDILYSVLDPRVRI
ADNKG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=39.2857142857143, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=38.4375, Blast_Score=228, Evalue=5e-61,
Organism=Escherichia coli, GI1789888, Length=323, Percent_Identity=34.984520123839, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=34.9264705882353, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=36.3636363636364, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=30.7453416149068, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1788504, Length=283, Percent_Identity=26.5017667844523, Blast_Score=95, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35519; Mature: 35519

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFIIRRLMQSVVVLFIMSLLVFLGVFAIGNPVDILINPQADQEDIRRTIAALGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCHH
WEQYLVFLQNALHGNLGISFAHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAG
HHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
LRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVFAVQLGWLPSNGRGETVRVLGVPLSFL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHH
TVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
ILINLAVDILYSVLDPRVRIADNKG
HHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MLVFIIRRLMQSVVVLFIMSLLVFLGVFAIGNPVDILINPQADQEDIRRTIAALGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCHH
WEQYLVFLQNALHGNLGISFAHGTPALKLIFERMPATLELAVCAILLAIVLGIPLGLWAG
HHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
LRPNGIAGKSIMTVSILGFSLPTFWVGLMLIMVFAVQLGWLPSNGRGETVRVLGVPLSFL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHH
TVDGIRHLILPAVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNTRIVGVHVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHH
NIMIPIVTVIALQFGSIIAFAIVTESIFAWPGMGKLIIDSIQLLDRPVIVAYLMVIVTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
ILINLAVDILYSVLDPRVRIADNKG
HHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]