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The map label for this gene is yggS [C]

Identifier: 73542486

GI number: 73542486

Start: 3070394

End: 3071083

Strand: Direct

Name: yggS [C]

Synonym: Reut_A2801

Alternate gene names: 73542486

Gene position: 3070394-3071083 (Clockwise)

Preceding gene: 73542482

Following gene: 73542487

Centisome position: 80.66

GC content: 64.78

Gene sequence:

>690_bases
ATGTCTGTAATTGCCGCCAACTTGCAAGCTGTGTACCGCGGCATCGCGGCGGCGGCACAACAAGCCGGAAGGACGCCTGA
AGAGGTGGTGCTGCTGGCCGTTTCCAAGACTGTCGCGCCTGGCATCGTGCGCGAGGCATTCGAGGCCGGACAGCGCGCTT
TTGGCGAAAACTACGTGCAGGAAGGCGTGGAAAAGATCGTCGCGCTGGCCGACCTGCGCAGCCAGATCACATGGCATTTC
ATCGGGCCGCTGCAAAGCAACAAGACGCGTCTCGTCGCCGAGCATTTTGACTGGGTGCATGCGCTCGATCGCCTCAAGAT
CGCACAACGGCTGTCGGAACAGCGCCCGGCCGGCATGGCGCCGCTGCAGGTCTGCATCCAGGTGAATATCAGCAACGAGG
CAAGCAAGAGCGGCGTAGCCCCCGGCGAGGTGCCGGAACTGGCTCGCGCCGTAGCCGCCCTGCCCGGCCTGCGGCTGCGC
GGGCTGATGGCGATTCCCGAACCGGCGACCGATCCTGCGGCACAGCGCGAGCCATTCACCGCCATGCGCAACCTGTTGCA
ATCGCTGCAGGCCGAAGGCCTGCAGCTCGACACCTTGTCGATGGGCATGTCGGGCGACATGAACGCAGCGATCGCAGAAG
GCGCCACCATCGTGCGCATCGGCACGGCCATTTTCGGCGCACGCGCTTGA

Upstream 100 bases:

>100_bases
CCAATAGCTGCGCGATGTCCATCTATAATGACCCCACCCGATTAATTGTATGCAGTACTTTTAGTACTTCTTTTTACTTC
TTCTGTATGTCCGCCGGATT

Downstream 100 bases:

>100_bases
GCGCCACGACAGCATTTCCCTACACCATTCCAGCCAGAGACTGACATGCTCGACACCCTGACCTTCGGCTTCCTTGGCGG
CGGCAATATGGCCACCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQEGVEKIVALADLRSQITWHF
IGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMAPLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLR
GLMAIPEPATDPAAQREPFTAMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGARA

Sequences:

>Translated_229_residues
MSVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQEGVEKIVALADLRSQITWHF
IGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMAPLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLR
GLMAIPEPATDPAAQREPFTAMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGARA
>Mature_228_residues
SVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQEGVEKIVALADLRSQITWHFI
GPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMAPLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLRG
LMAIPEPATDPAAQREPFTAMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGARA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=234, Percent_Identity=37.6068376068376, Blast_Score=114, Evalue=8e-26,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=59.3886462882096, Blast_Score=259, Evalue=7e-71,
Organism=Caenorhabditis elegans, GI17533025, Length=222, Percent_Identity=36.036036036036, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=238, Percent_Identity=34.0336134453782, Blast_Score=110, Evalue=1e-25,
Organism=Drosophila melanogaster, GI45550861, Length=248, Percent_Identity=38.3064516129032, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24340; Mature: 24209

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
EGVEKIVALADLRSQITWHFIGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMA
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLRGLMAIPEPATDPAAQREPFT
CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHCCCCHHCCEEECCCCCCCCCCCCCHHH
AMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGARA
HHHHHHHHHHHCCCEEEHHHCCCCCCCCHHHHCCCEEEEEHHHHHCCCC
>Mature Secondary Structure 
SVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQ
CHHHHHHHHHHHHHHHHHHHHCCCHHHHEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
EGVEKIVALADLRSQITWHFIGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMA
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLRGLMAIPEPATDPAAQREPFT
CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHCCCCHHCCEEECCCCCCCCCCCCCHHH
AMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGARA
HHHHHHHHHHHCCCEEEHHHCCCCCCCCHHHHCCCEEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]