| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
Click here to switch to the map view.
The map label for this gene is ygfF [C]
Identifier: 73541235
GI number: 73541235
Start: 1665031
End: 1665795
Strand: Direct
Name: ygfF [C]
Synonym: Reut_A1545
Alternate gene names: 73541235
Gene position: 1665031-1665795 (Clockwise)
Preceding gene: 73541234
Following gene: 73541236
Centisome position: 43.74
GC content: 66.14
Gene sequence:
>765_bases ATGAGCCGACGTACTGAAGGAAAGATCGCCATCGTCACCGGCGCCGCGAGCGGTGTCGGTCGGGAAGACGCGCTGTTGCT GGCGCGTGAAGGCGCGCGCGTGGTGCTGACCGACCTCAACGAGGAAGCCGGCCATGCGCTGGCCCGCGAAATCGGCGAGA CCGCGCTGTTCGTGCAGCACGACATTGCCAGCGAGGCCGGCTGGCAGCAGGTGATGGCACGCACCGAGCAGCGCTTCGGC GCTCCCAATGTCCTCGTCAACAACGCCGCAATCCTTCTGCTTGGTAACGTCGAAGACACGTCGCTGGAGCAATGGCAGCG CGTGCAGCGCATCAACGCCGATGGCTACTTCCTCGGCTGCAAGTACGGCGTGGCCGCGATGAAGGCGGACGGTGGCAGCA TCGTCAACATGTCGTCGGTGGCGGCACTCGGCGGTATGGGTGCGTTCTGTGCCTACAGCGCCAGCAAGGGCGCAGTGGCA GCACTGACGCGCAGCGTCGCGGCCCACTGCAAGCAGAGCGGTTACAAGGTGCGCTGCAACTCGATCCACCCCGACGGCAT CCTGACGCCGATGACGGCGGCCTTCCTGCCCGGCGGTGCCACCGCCTTGCCGGAAGAGGTGGGCGGCGTGGACCCGATGC AGCGCATGTGCCACCCGCGCGACGTGGCCAATCTCGTACTGTTCCTGGCCTCCGATGAATCGCGTTTCATCAATGGCGCC GAGCTGCGCATCGACAACGCGCAGTCCATCATGGGCGTCGCCTGA
Upstream 100 bases:
>100_bases ATCCATATGTAAGCGGCCGTCAGAAGGCCGCCATGCAAATACCAGCTGGCCGGCAACCGGCAGGCGGAAATCAGAAACAA CAATCAGCAGGAGACCAATC
Downstream 100 bases:
>100_bases CGCAAACGACTATGGTGCAAGCGCAATTTCACCGGCTGCAGATCGCCGAAGTCGTGGCGGAGACGGACCAGGCGCATTCG CTGGTCTTCGCGCTGCCTGA
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MSRRTEGKIAIVTGAASGVGREDALLLAREGARVVLTDLNEEAGHALAREIGETALFVQHDIASEAGWQQVMARTEQRFG APNVLVNNAAILLLGNVEDTSLEQWQRVQRINADGYFLGCKYGVAAMKADGGSIVNMSSVAALGGMGAFCAYSASKGAVA ALTRSVAAHCKQSGYKVRCNSIHPDGILTPMTAAFLPGGATALPEEVGGVDPMQRMCHPRDVANLVLFLASDESRFINGA ELRIDNAQSIMGVA
Sequences:
>Translated_254_residues MSRRTEGKIAIVTGAASGVGREDALLLAREGARVVLTDLNEEAGHALAREIGETALFVQHDIASEAGWQQVMARTEQRFG APNVLVNNAAILLLGNVEDTSLEQWQRVQRINADGYFLGCKYGVAAMKADGGSIVNMSSVAALGGMGAFCAYSASKGAVA ALTRSVAAHCKQSGYKVRCNSIHPDGILTPMTAAFLPGGATALPEEVGGVDPMQRMCHPRDVANLVLFLASDESRFINGA ELRIDNAQSIMGVA >Mature_253_residues SRRTEGKIAIVTGAASGVGREDALLLAREGARVVLTDLNEEAGHALAREIGETALFVQHDIASEAGWQQVMARTEQRFGA PNVLVNNAAILLLGNVEDTSLEQWQRVQRINADGYFLGCKYGVAAMKADGGSIVNMSSVAALGGMGAFCAYSASKGAVAA LTRSVAAHCKQSGYKVRCNSIHPDGILTPMTAAFLPGGATALPEEVGGVDPMQRMCHPRDVANLVLFLASDESRFINGAE LRIDNAQSIMGVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.3953488372093, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=32.6996197718631, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=34.5098039215686, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=32.5688073394495, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI31542939, Length=262, Percent_Identity=30.5343511450382, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI83715985, Length=264, Percent_Identity=31.8181818181818, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=32.2175732217573, Blast_Score=94, Evalue=9e-20, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=34.1040462427746, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=28.8973384030418, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI5031737, Length=242, Percent_Identity=28.099173553719, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=29.1497975708502, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI40807363, Length=210, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=27.1604938271605, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=26.9911504424779, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4504505, Length=242, Percent_Identity=30.1652892561983, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI310128830, Length=177, Percent_Identity=31.0734463276836, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310115468, Length=177, Percent_Identity=31.0734463276836, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI10190704, Length=243, Percent_Identity=26.7489711934156, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI33667109, Length=177, Percent_Identity=29.3785310734463, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=35.655737704918, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=33.7209302325581, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=29.5081967213115, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.9672131147541, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=31.1475409836066, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=30.9917355371901, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=28.7449392712551, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=27.7551020408163, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=29.9212598425197, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.1124497991968, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.515625, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788891, Length=236, Percent_Identity=26.6949152542373, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=26.4227642276423, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=36.1111111111111, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=31.9391634980989, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17559104, Length=277, Percent_Identity=32.129963898917, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=30.8823529411765, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=32.7868852459016, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=30.6772908366534, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=32.5842696629214, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=30.3703703703704, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.0861423220974, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=28.968253968254, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=29.2592592592593, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.0756972111554, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17560150, Length=272, Percent_Identity=28.6764705882353, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17538480, Length=281, Percent_Identity=28.1138790035587, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17562990, Length=274, Percent_Identity=31.021897810219, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=29.1044776119403, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=30.4832713754647, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.4820717131474, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=30.4832713754647, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=28.1481481481481, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17560332, Length=279, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=27.8884462151394, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=28.4644194756554, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=27.9245283018868, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=29.2307692307692, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.4552845528455, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17538486, Length=277, Percent_Identity=26.7148014440433, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=243, Percent_Identity=25.5144032921811, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=34.4, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=33.7209302325581, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=33.0708661417323, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI17737361, Length=261, Percent_Identity=35.2490421455939, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=32.9268292682927, Blast_Score=97, Evalue=8e-21, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=29.5546558704453, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=30.3149606299213, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=27.3469387755102, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI18859837, Length=204, Percent_Identity=31.3725490196078, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364892, Length=221, Percent_Identity=27.6018099547511, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=27.8350515463918, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI221331218, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.51 [H]
Molecular weight: Translated: 26702; Mature: 26571
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRTEGKIAIVTGAASGVGREDALLLAREGARVVLTDLNEEAGHALAREIGETALFVQH CCCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCEEEEEH DIASEAGWQQVMARTEQRFGAPNVLVNNAAILLLGNVEDTSLEQWQRVQRINADGYFLGC HHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEE KYGVAAMKADGGSIVNMSSVAALGGMGAFCAYSASKGAVAALTRSVAAHCKQSGYKVRCN ECCEEEEECCCCCEEEHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEC SIHPDGILTPMTAAFLPGGATALPEEVGGVDPMQRMCHPRDVANLVLFLASDESRFINGA CCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCHHHHHCCHHHHHHEEEEEECCCCCCCCCE ELRIDNAQSIMGVA EEEECCHHHHHCCC >Mature Secondary Structure SRRTEGKIAIVTGAASGVGREDALLLAREGARVVLTDLNEEAGHALAREIGETALFVQH CCCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCEEEEEH DIASEAGWQQVMARTEQRFGAPNVLVNNAAILLLGNVEDTSLEQWQRVQRINADGYFLGC HHHHHHHHHHHHHHHHHHCCCCCEEECCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEE KYGVAAMKADGGSIVNMSSVAALGGMGAFCAYSASKGAVAALTRSVAAHCKQSGYKVRCN ECCEEEEECCCCCEEEHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEC SIHPDGILTPMTAAFLPGGATALPEEVGGVDPMQRMCHPRDVANLVLFLASDESRFINGA CCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCHHHHHCCHHHHHHEEEEEECCCCCCCCCE ELRIDNAQSIMGVA EEEECCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8382516; 2026158; 8617258 [H]