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The map label for this gene is ltrA [H]

Identifier: 73539894

GI number: 73539894

Start: 212630

End: 213538

Strand: Reverse

Name: ltrA [H]

Synonym: Reut_A0188

Alternate gene names: 73539894

Gene position: 213538-212630 (Counterclockwise)

Preceding gene: 73539897

Following gene: 73539891

Centisome position: 5.61

GC content: 67.66

Gene sequence:

>909_bases
ATGCAGGCTGCGCCACTCAATGCCATGGCCGTGTTCGCGCGCGTGGTGGAATGCGGCAGCTTCTCCGCCGCCGCGCAGGA
TCTCGGCATGACGCCTTCGGCGGTCAGCCGGCATGTATCGCGGCTCGAAGCCACGCTTGGTGCCAGCCTGCTGCAGAGGA
CCACACGGGCTTTTGCGCTGACTGAACTTGGCCATGCCGTCTACGCGGCCTGCGCCCGCATGTCGGCAGCCGCGCGCGAA
GTCACCGCACTTGGCACCGACCATACCGGCGAGCCGCATGGCGTACTGCGCGTCAGCGCGTCGGTCGTATTCGGCCAGGC
GTGGCTGGCACCCCGCCTTCCCGCGCTGCTGGAGCGCTATCCGGCCCTGGAACTCCAGCTGACGCTGGTTGATCGCATGG
TCGATCTGGTAGAGGAAGGACTCGACGTCGCGATCCGCATCGCGCGCGAACTGCCGCCTGGGCTGGTGGCGCGGCCGTTA
CGCCCGGTGCGCTACCAGCTCGTCGCCTCGCCGGGATGGTTGCGGCTACATGACGCACCAGCAAGCCCGGAAGAGCTGCC
GCACACGCGCTGCGTGTACCTTGGGTATGGCGCGTTCGGCGAGCGTTGGTCGTTGCGGCACAAGACTTCGGGCGATGATG
TCACCGTGCGCATTCCGCCACGCTTCACAGTCAACAACAGCATGGCCATCGTCGCGATGGTCGAGCGCGATGCCGGTATA
GGCCTCGTGCCAGATTTCTCCGCAGCCGCGGGCCTCGCCGACGGCCGGCTGGTCACGGTGCTGGACGACTGGGACATCCT
GGAGCCGTACATCGGTACGGCCTACGCCGTGTACACCCCGACGCGGCACGTGGCGCCCAAGGTGCGCGCGTTCGTCGACT
ATCTGGTGGCCACGACCGCCGAGCGCTGA

Upstream 100 bases:

>100_bases
CAGAATCTTTGCGTGCATTGTTCCATCATGATCAGAGATCAACAATCCCGCAAGAACTCAATTAGTATTTGACTCTAAGT
CAAAGAATGGGGAGACCCGG

Downstream 100 bases:

>100_bases
CCGCCCGGCGTTCGCGCGTCGCTCAGGCCGAGCAGACCCGGTACACCGCGAGGCTGCCGCGCCAGTTCACGCCCCAGTTC
ACGGTGATGCCTTCGTGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQAAPLNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGHAVYAACARMSAAARE
VTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERYPALELQLTLVDRMVDLVEEGLDVAIRIARELPPGLVARPL
RPVRYQLVASPGWLRLHDAPASPEELPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIPPRFTVNNSMAIVAMVERDAGI
GLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYLVATTAER

Sequences:

>Translated_302_residues
MQAAPLNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGHAVYAACARMSAAARE
VTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERYPALELQLTLVDRMVDLVEEGLDVAIRIARELPPGLVARPL
RPVRYQLVASPGWLRLHDAPASPEELPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIPPRFTVNNSMAIVAMVERDAGI
GLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYLVATTAER
>Mature_302_residues
MQAAPLNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFALTELGHAVYAACARMSAAARE
VTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERYPALELQLTLVDRMVDLVEEGLDVAIRIARELPPGLVARPL
RPVRYQLVASPGWLRLHDAPASPEELPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIPPRFTVNNSMAIVAMVERDAGI
GLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYLVATTAER

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=299, Percent_Identity=29.0969899665552, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=32.6460481099656, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=33.8926174496644, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=31.5436241610738, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=27.7966101694915, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693193, Length=308, Percent_Identity=30.1948051948052, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=26.7558528428094, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789173, Length=298, Percent_Identity=28.8590604026846, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=26.5993265993266, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788706, Length=315, Percent_Identity=25.7142857142857, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32616; Mature: 32616

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAAPLNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFAL
CCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TELGHAVYAACARMSAAAREVTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHC
PALELQLTLVDRMVDLVEEGLDVAIRIARELPPGLVARPLRPVRYQLVASPGWLRLHDAP
CCCEEEHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCEEEEECCC
ASPEELPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIPPRFTVNNSMAIVAMVERDAGI
CCHHHCCCCEEEEEECCCCCCCCEECCCCCCCEEEEEECCEEEECCCEEEEEEEECCCCC
GLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYLVATTA
CCCCCCHHHCCCCCCCEEEEECCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCC
ER
CC
>Mature Secondary Structure
MQAAPLNAMAVFARVVECGSFSAAAQDLGMTPSAVSRHVSRLEATLGASLLQRTTRAFAL
CCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TELGHAVYAACARMSAAAREVTALGTDHTGEPHGVLRVSASVVFGQAWLAPRLPALLERY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHC
PALELQLTLVDRMVDLVEEGLDVAIRIARELPPGLVARPLRPVRYQLVASPGWLRLHDAP
CCCEEEHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCEEEEECCC
ASPEELPHTRCVYLGYGAFGERWSLRHKTSGDDVTVRIPPRFTVNNSMAIVAMVERDAGI
CCHHHCCCCEEEEEECCCCCCCCEECCCCCCCEEEEEECCEEEECCCEEEEEEEECCCCC
GLVPDFSAAAGLADGRLVTVLDDWDILEPYIGTAYAVYTPTRHVAPKVRAFVDYLVATTA
CCCCCCHHHCCCCCCCEEEEECCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCC
ER
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]