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The map label for this gene is ydfH [H]

Identifier: 73538496

GI number: 73538496

Start: 1365548

End: 1366267

Strand: Reverse

Name: ydfH [H]

Synonym: Reut_B4670

Alternate gene names: 73538496

Gene position: 1366267-1365548 (Counterclockwise)

Preceding gene: 73538497

Following gene: 73538495

Centisome position: 50.12

GC content: 62.64

Gene sequence:

>720_bases
ATGTCTGCGCAAACCCAACCTATCGTCCAGTCACCGGGACTGACCCTCTCCGTGCAACCGATCAACGCCGGCGCCAGCCT
GCGCGACCAGGCCTATGCCATGTTGCGCCAGGCCATCGCCGACGCGGATATCTACCAGTCGCGCGACGAGATCCGGCTCG
ATGAACGCGTGCTGAGCGAGGCCATGGGCGTGAGCCGCACGCCGATCCGCGAAGCCATGACACTGCTGGAGCAGGAAGGC
TTCCTGCGCACGGTGCCCCGCCGCGGCATCTACATCATGCGCAAGACCAAGCGCGAGATCGTCGAGATGATCCAGATGTG
GGCGGCGCTGGAAAGCATGGCGGCGCGCCTGGCCACGCTGCACGCCACCGACGCGGAAATCGCGCAACTGCGCAGCATGT
TCGACAGCTTCCGCGATTCGACGCCGGCCGAGCATATCGAGGAATACTCCGACGCCAATATCGTGTTCCACCAGGCGATC
GTGCAGTTGTCGAAGTCGCAGATCATCATGGACACGATCCGCAACATCTTCATCCACGTGAGGGCGATCCGGAAGATGAC
CATCTCGCAGAGCGACCGCGCGGCGCGTTCGATCGTGGATCACTTGCGCATCATCGAGGCGCTGGAAAAACGCGATACGG
AACTGGCAGAGCGCCTGGTGCGCCAGCATTCGCTGGACCTGGCCGACTACGTCGAAAAGCACTGCGACTTCCTTGACTGA

Upstream 100 bases:

>100_bases
GCGATCCGGGAATGAGTCCAGATGATTTTGCTAAGCTGTGCAGGAATGCGGAGGGCAGCCATTGTGGCCGCCGCGCCACC
GGTCTCACACGAGCTCATTC

Downstream 100 bases:

>100_bases
TCGGCTCATTTTTACAGCTTACCGATAAGAACGGCGGACCGAGTCCGCCGTTTTTTGTTTCTGAACGCGGACGTGGGCCG
GCTTCACCGTTGGTATGTGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSAQTQPIVQSPGLTLSVQPINAGASLRDQAYAMLRQAIADADIYQSRDEIRLDERVLSEAMGVSRTPIREAMTLLEQEG
FLRTVPRRGIYIMRKTKREIVEMIQMWAALESMAARLATLHATDAEIAQLRSMFDSFRDSTPAEHIEEYSDANIVFHQAI
VQLSKSQIIMDTIRNIFIHVRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD

Sequences:

>Translated_239_residues
MSAQTQPIVQSPGLTLSVQPINAGASLRDQAYAMLRQAIADADIYQSRDEIRLDERVLSEAMGVSRTPIREAMTLLEQEG
FLRTVPRRGIYIMRKTKREIVEMIQMWAALESMAARLATLHATDAEIAQLRSMFDSFRDSTPAEHIEEYSDANIVFHQAI
VQLSKSQIIMDTIRNIFIHVRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD
>Mature_238_residues
SAQTQPIVQSPGLTLSVQPINAGASLRDQAYAMLRQAIADADIYQSRDEIRLDERVLSEAMGVSRTPIREAMTLLEQEGF
LRTVPRRGIYIMRKTKREIVEMIQMWAALESMAARLATLHATDAEIAQLRSMFDSFRDSTPAEHIEEYSDANIVFHQAIV
QLSKSQIIMDTIRNIFIHVRAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=26.8181818181818, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27322; Mature: 27191

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQTQPIVQSPGLTLSVQPINAGASLRDQAYAMLRQAIADADIYQSRDEIRLDERVLSE
CCCCCCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AMGVSRTPIREAMTLLEQEGFLRTVPRRGIYIMRKTKREIVEMIQMWAALESMAARLATL
HHCCCCCCHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HATDAEIAQLRSMFDSFRDSTPAEHIEEYSDANIVFHQAIVQLSKSQIIMDTIRNIFIHV
HCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SAQTQPIVQSPGLTLSVQPINAGASLRDQAYAMLRQAIADADIYQSRDEIRLDERVLSE
CCCCCCHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AMGVSRTPIREAMTLLEQEGFLRTVPRRGIYIMRKTKREIVEMIQMWAALESMAARLATL
HHCCCCCCHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HATDAEIAQLRSMFDSFRDSTPAEHIEEYSDANIVFHQAIVQLSKSQIIMDTIRNIFIHV
HCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAIRKMTISQSDRAARSIVDHLRIIEALEKRDTELAERLVRQHSLDLADYVEKHCDFLD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]