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The map label for this gene is ykoW [H]

Identifier: 73538173

GI number: 73538173

Start: 1002584

End: 1002916

Strand: Reverse

Name: ykoW [H]

Synonym: Reut_B4343

Alternate gene names: 73538173

Gene position: 1002916-1002584 (Counterclockwise)

Preceding gene: 73538174

Following gene: 73538169

Centisome position: 36.79

GC content: 56.76

Gene sequence:

>333_bases
ATGTCTATCGACGATTTCGGAACGGGATATTCCTCGCTCGCGCAGCTGAAGAAGTTCCAGGTTCGCAAGCTCAAGATCGA
TCAGTCGTTTGTGCGGGACATTGCCACCAACGCCGAAGACCGAGCGATCGTCGGTGCCATCGTGCAGATGGCACGCAATC
TCGGGCTCCTGACCATCGCGGAAGGCGTGGAAACTGCCGAGCAGATATCGATCCTGCGCGCCGAGGGCTGCAATGAGATG
CAGGGCTACTACTTCAGCAAGCCTTTGTCAGCGGTGCAATTCGAGCAATTTGCCAGGACACGGGAGTCATGTCCGGATCG
ACTTGACGCATAG

Upstream 100 bases:

>100_bases
GGCGCAGCACCTGGAGCTCGAACTGACGGAAGGCGTCGCCATGCGCGATCCGCAGCGTGCGATCGCCATGATCCAGGAGC
TTCATGAGCGCGGCGTATGC

Downstream 100 bases:

>100_bases
GCTCGCGACGGCTGTGGCACCAATGCGGTCTATGGCTTGTGGTTGACGCGCCCGGCGAACGACTTCCATTCACGGAACGT
GGTGTCGAGGCAGGCCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSIDDFGTGYSSLAQLKKFQVRKLKIDQSFVRDIATNAEDRAIVGAIVQMARNLGLLTIAEGVETAEQISILRAEGCNEM
QGYYFSKPLSAVQFEQFARTRESCPDRLDA

Sequences:

>Translated_110_residues
MSIDDFGTGYSSLAQLKKFQVRKLKIDQSFVRDIATNAEDRAIVGAIVQMARNLGLLTIAEGVETAEQISILRAEGCNEM
QGYYFSKPLSAVQFEQFARTRESCPDRLDA
>Mature_109_residues
SIDDFGTGYSSLAQLKKFQVRKLKIDQSFVRDIATNAEDRAIVGAIVQMARNLGLLTIAEGVETAEQISILRAEGCNEMQ
GYYFSKPLSAVQFEQFARTRESCPDRLDA

Specific function: Probable signaling protein whose physiological role is not yet known [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=99, Percent_Identity=48.4848484848485, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1790496, Length=107, Percent_Identity=44.8598130841121, Blast_Score=90, Evalue=4e-20,
Organism=Escherichia coli, GI1788502, Length=99, Percent_Identity=42.4242424242424, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI87081921, Length=91, Percent_Identity=46.1538461538462, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI87081845, Length=94, Percent_Identity=39.3617021276596, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1786507, Length=93, Percent_Identity=41.9354838709677, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1788849, Length=88, Percent_Identity=45.4545454545455, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI87082096, Length=88, Percent_Identity=43.1818181818182, Blast_Score=79, Evalue=8e-17,
Organism=Escherichia coli, GI87081980, Length=107, Percent_Identity=35.5140186915888, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI87081743, Length=96, Percent_Identity=42.7083333333333, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI226510982, Length=99, Percent_Identity=39.3939393939394, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 12254; Mature: 12123

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDDFGTGYSSLAQLKKFQVRKLKIDQSFVRDIATNAEDRAIVGAIVQMARNLGLLTIA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
EGVETAEQISILRAEGCNEMQGYYFSKPLSAVQFEQFARTRESCPDRLDA
HHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SIDDFGTGYSSLAQLKKFQVRKLKIDQSFVRDIATNAEDRAIVGAIVQMARNLGLLTIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
EGVETAEQISILRAEGCNEMQGYYFSKPLSAVQFEQFARTRESCPDRLDA
HHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377; 11728710 [H]