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The map label for this gene is yciR [C]

Identifier: 73538174

GI number: 73538174

Start: 1002930

End: 1005053

Strand: Reverse

Name: yciR [C]

Synonym: Reut_B4344

Alternate gene names: 73538174

Gene position: 1005053-1002930 (Counterclockwise)

Preceding gene: 73538175

Following gene: 73538173

Centisome position: 36.87

GC content: 63.47

Gene sequence:

>2124_bases
GTGTCCGGCCGGATAAGCCTGGTGCATCGGCATCGCGATGCCGACGGAGCGAACGGTACAGGTACCGCGCCGGGTCGGGC
CTCCAGGCAGGCTTCCGTCATTGGCGGGGTCGGCGTGGCTTGCGCCACCGCGTATCTGTCGCTCGCCGTGCCAACTGCAA
CCAGCATCACGTTGACGGCGGCAATGCTCGGGCTGTCCGCGACGCTGACGCGGCTCGCCGTGTTGCGCGCACGGCACAAG
CAGACCGAGTTCAGGAGCGTTCGGCTGAGCCAGCTATACAGCGCACTGAGTCAATGCAATCAGGCCATCGCACGTTGCCG
CAGTGAATCGGAATTGTTCGAGGACATCTGCCGGGCCGCCGTGACGATCGGCGGCATGCAGATGACGTGGATCGGCCTGC
TCGATGACAGCAAGAGGCTGATGCCATTGGCTGTCCATGGACAGGGCATGGAGTACCTGCGGGATTTGAAGGTTTCCGCC
GACGAAGCGGATCCGCATGGACGCGGACCCACCGGCCTTGCATTGCGCAGCGATTCGCCGTACTGGTGCCAGGACGTGCA
CGCAGACTCCGCCACGGTTCTCTGGCGAACGCAGAGCCAGAGATTTGGCTGGAAGTCATTCGCCGTGCTGCCTTTGCACC
GTGGCGATCGCGTGATCGGCGCCTTGTCGCTCTACGGTTCCCTTGCCTATGTCTTCGATGCAGTCGTGCGCGACCTGCTG
ATGGACATGGTCAGGAACATCGACTATGCGCTGGCCAATCTCGACCGGGAAACGGAGCGGCAGCGCGCCAACGAAGCACT
GCGTGAAAGCGAGCAGCGCTTGCGCACCGTGATCGAGACGCAGCCGGAGTGTGTCAAGACCATCGATCGCAGCGGCAATC
TGCTGGAAATGAATGCCGCGGGTCTCGCGATGATCGGCGCGGACTCGCTGGCGCAGGCGCAGCGTCATTACACGGAAGTC
ATCCTTCCCGAGTATCGCGACGCGTTTGCCGCCTTGCATGCGCGCGTCATGTCCGGCGAAAGCGGGCTGCTTGAATTCGA
GATTGTCGGCTTGCGCGGCCAGCGCCGCTGGCTGGAAACGCATGCCACGCCGATGCGAGGCGCCGATGGCTGCGTCACGC
GGCTGCTTGCGGTCACGCGCGATACCACCGACCGCAAGCAGGCATCGGATCGCATCCAGCATCTCGCCCATTACGACGCA
TTGACGGGGCTGCCCAACCGCCGCCTTGTGGAGAATCGGGCCCGGCAGGCCTTCAGTCAAGCCTCGGACGGGCACACGCT
TGCCATAATGTTCCTGGATCTCGACCTGTTCAAGGACATCAACGACACGCTGGGGCACAGCGCTGGTGATGCCTCGCTGA
TTGAGCTGGCCCGAAGGCTGCGTCCCTTGTTGAGCGAGGGCGATGTGTTGGCGAGATTCGGCGGCGACGAGTTCCTGATC
CTGCTGCCCGATGCCTGCGAACGTACCGCTGCGCAGACCGCGCAGAAGGTGCTCGACACCATCGCGGAGCCCTATCACCT
CGGCCCTTACGACCTGACGGTCAGCGGCTCCATCGGCATTGCCCTCTACCCGCGCGACGGCACCGACTTCGAAAGCCTTT
CGAAGAACGCGGACACTGCCATGTACCACGTGAAGAAACAAGGCCGGCGCGGATACTGCTTCTTCACCCCGCAGATGCAG
GCGGGCATGGTCCGCTATCTCAAGGTGGTGGGCGCCTTGCGCCAGGCGCTGCCTCGCAATCAGTTTCACCTGCACTATCA
GCCCCAGATGTCCATGGACGACGGCAAGCTGATCGGCGTGGAGGCGTTGCTGCGCTGGAATCATCCCGAGCTCGGCGCCG
TGTCACCGGCGGAATTCATTCCGGTGGCCGAGGAGAGCGGTGCAATTCTGCCTATCGGCGAATGGGTCTTGCGGCACGCG
GCACGACAGGCGCGCATTTGGGTGCAGGCAGGCTATACGCCCGTGTTCCACGGTTCAGTTCCACCATGCCGACCTTCCCA
ACCTGGTTTCACGCATTCTGGAAGAGGAAGACCTGCCGGCGCAGCACCTGGAGCTCGAACTGACGGAAGGCGTCGCCATG
CGCGATCCGCAGCGTGCGATCGCCATGATCCAGGAGCTTCATGA

Upstream 100 bases:

>100_bases
GCGAAAACCTGGAAATCCCGCCGACCTCCATGACCCATTCCGAGCGCCGTCCGCACGGCTCGCGCACGCCGCAATCCGCA
TTTTCGCCGTTGGGGCTCGC

Downstream 100 bases:

>100_bases
GCGCGGCGTATGCATGTCTATCGACGATTTCGGAACGGGATATTCCTCGCTCGCGCAGCTGAAGAAGTTCCAGGTTCGCA
AGCTCAAGATCGATCAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 707; Mature: 706

Protein sequence:

>707_residues
MSGRISLVHRHRDADGANGTGTAPGRASRQASVIGGVGVACATAYLSLAVPTATSITLTAAMLGLSATLTRLAVLRARHK
QTEFRSVRLSQLYSALSQCNQAIARCRSESELFEDICRAAVTIGGMQMTWIGLLDDSKRLMPLAVHGQGMEYLRDLKVSA
DEADPHGRGPTGLALRSDSPYWCQDVHADSATVLWRTQSQRFGWKSFAVLPLHRGDRVIGALSLYGSLAYVFDAVVRDLL
MDMVRNIDYALANLDRETERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAAGLAMIGADSLAQAQRHYTEV
ILPEYRDAFAALHARVMSGESGLLEFEIVGLRGQRRWLETHATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDA
LTGLPNRRLVENRARQAFSQASDGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLI
LLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTAMYHVKKQGRRGYCFFTPQMQ
AGMVRYLKVVGALRQALPRNQFHLHYQPQMSMDDGKLIGVEALLRWNHPELGAVSPAEFIPVAEESGAILPIGEWVLRHA
ARQARIWVQAGYTPVFHGSVPPCRPSQPGFTHSGRGRPAGAAPGARTDGRRRHARSAACDRHDPGAS

Sequences:

>Translated_707_residues
MSGRISLVHRHRDADGANGTGTAPGRASRQASVIGGVGVACATAYLSLAVPTATSITLTAAMLGLSATLTRLAVLRARHK
QTEFRSVRLSQLYSALSQCNQAIARCRSESELFEDICRAAVTIGGMQMTWIGLLDDSKRLMPLAVHGQGMEYLRDLKVSA
DEADPHGRGPTGLALRSDSPYWCQDVHADSATVLWRTQSQRFGWKSFAVLPLHRGDRVIGALSLYGSLAYVFDAVVRDLL
MDMVRNIDYALANLDRETERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAAGLAMIGADSLAQAQRHYTEV
ILPEYRDAFAALHARVMSGESGLLEFEIVGLRGQRRWLETHATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDA
LTGLPNRRLVENRARQAFSQASDGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLI
LLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTAMYHVKKQGRRGYCFFTPQMQ
AGMVRYLKVVGALRQALPRNQFHLHYQPQMSMDDGKLIGVEALLRWNHPELGAVSPAEFIPVAEESGAILPIGEWVLRHA
ARQARIWVQAGYTPVFHGSVPPCRPSQPGFTHSGRGRPAGAAPGARTDGRRRHARSAACDRHDPGAS
>Mature_706_residues
SGRISLVHRHRDADGANGTGTAPGRASRQASVIGGVGVACATAYLSLAVPTATSITLTAAMLGLSATLTRLAVLRARHKQ
TEFRSVRLSQLYSALSQCNQAIARCRSESELFEDICRAAVTIGGMQMTWIGLLDDSKRLMPLAVHGQGMEYLRDLKVSAD
EADPHGRGPTGLALRSDSPYWCQDVHADSATVLWRTQSQRFGWKSFAVLPLHRGDRVIGALSLYGSLAYVFDAVVRDLLM
DMVRNIDYALANLDRETERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAAGLAMIGADSLAQAQRHYTEVI
LPEYRDAFAALHARVMSGESGLLEFEIVGLRGQRRWLETHATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDAL
TGLPNRRLVENRARQAFSQASDGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLIL
LPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTAMYHVKKQGRRGYCFFTPQMQA
GMVRYLKVVGALRQALPRNQFHLHYQPQMSMDDGKLIGVEALLRWNHPELGAVSPAEFIPVAEESGAILPIGEWVLRHAA
RQARIWVQAGYTPVFHGSVPPCRPSQPGFTHSGRGRPAGAAPGARTDGRRRHARSAACDRHDPGAS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=314, Percent_Identity=36.624203821656, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI87081921, Length=266, Percent_Identity=32.3308270676692, Blast_Score=152, Evalue=7e-38,
Organism=Escherichia coli, GI1788381, Length=328, Percent_Identity=29.8780487804878, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081881, Length=264, Percent_Identity=31.4393939393939, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87081977, Length=199, Percent_Identity=33.6683417085427, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI226510982, Length=252, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=32.7485380116959, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=34.1614906832298, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=35.8024691358025, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=187, Percent_Identity=32.0855614973262, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=35.4430379746835, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=32.2981366459627, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=154, Percent_Identity=31.1688311688312, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.8343558282209, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081845, Length=71, Percent_Identity=43.6619718309859, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081980, Length=71, Percent_Identity=40.8450704225352, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77579; Mature: 77448

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRISLVHRHRDADGANGTGTAPGRASRQASVIGGVGVACATAYLSLAVPTATSITLTA
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
AMLGLSATLTRLAVLRARHKQTEFRSVRLSQLYSALSQCNQAIARCRSESELFEDICRAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VTIGGMQMTWIGLLDDSKRLMPLAVHGQGMEYLRDLKVSADEADPHGRGPTGLALRSDSP
HHCCCEEEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
YWCQDVHADSATVLWRTQSQRFGWKSFAVLPLHRGDRVIGALSLYGSLAYVFDAVVRDLL
CHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
MDMVRNIDYALANLDRETERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCC
GLAMIGADSLAQAQRHYTEVILPEYRDAFAALHARVMSGESGLLEFEIVGLRGQRRWLET
CEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
HATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDALTGLPNRRLVENRARQAFSQ
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ASDGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLI
CCCCCEEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEE
LLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTA
ECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHCCCHHH
MYHVKKQGRRGYCFFTPQMQAGMVRYLKVVGALRQALPRNQFHLHYQPQMSMDDGKLIGV
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEH
EALLRWNHPELGAVSPAEFIPVAEESGAILPIGEWVLRHAARQARIWVQAGYTPVFHGSV
HHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHEEEEEECCCEEECCCC
PPCRPSQPGFTHSGRGRPAGAAPGARTDGRRRHARSAACDRHDPGAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SGRISLVHRHRDADGANGTGTAPGRASRQASVIGGVGVACATAYLSLAVPTATSITLTA
CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
AMLGLSATLTRLAVLRARHKQTEFRSVRLSQLYSALSQCNQAIARCRSESELFEDICRAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VTIGGMQMTWIGLLDDSKRLMPLAVHGQGMEYLRDLKVSADEADPHGRGPTGLALRSDSP
HHCCCEEEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
YWCQDVHADSATVLWRTQSQRFGWKSFAVLPLHRGDRVIGALSLYGSLAYVFDAVVRDLL
CHHHHCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
MDMVRNIDYALANLDRETERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCC
GLAMIGADSLAQAQRHYTEVILPEYRDAFAALHARVMSGESGLLEFEIVGLRGQRRWLET
CEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
HATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDALTGLPNRRLVENRARQAFSQ
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ASDGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLI
CCCCCEEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEE
LLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTA
ECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHCCCHHH
MYHVKKQGRRGYCFFTPQMQAGMVRYLKVVGALRQALPRNQFHLHYQPQMSMDDGKLIGV
HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEH
EALLRWNHPELGAVSPAEFIPVAEESGAILPIGEWVLRHAARQARIWVQAGYTPVFHGSV
HHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHEEEEEECCCEEECCCC
PPCRPSQPGFTHSGRGRPAGAAPGARTDGRRRHARSAACDRHDPGAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]