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The map label for this gene is ydhJ [H]

Identifier: 73537915

GI number: 73537915

Start: 722410

End: 723294

Strand: Reverse

Name: ydhJ [H]

Synonym: Reut_B4082

Alternate gene names: 73537915

Gene position: 723294-722410 (Counterclockwise)

Preceding gene: 73537916

Following gene: 73537914

Centisome position: 26.53

GC content: 68.02

Gene sequence:

>885_bases
ATGACGTTCAGATTCCGCCCCCTCTTTCGGCTGTTGCCCACGCTGCTGGCACTGCTCGCCGCTGTCCTGGTGCTGCGGCA
CCTGTGGGATTACTACACGGCCGCGCCGTGGACGCGCGACGGCCACGTGCGCGCCGATATCGTCCAGATCGCACCGGACG
TCTCCGGCCTGGTGACGCGCGTGCTCGTGCACGACAACCAGCAAGTGCGGCGCGGCCAAGTGCTGTTCGAGATCGACCGC
GACCGCTACGCGCTGGCCCTGCAGCAGGCGACAGCGAATGCCGCGGCATTGCGCGCGACACTGACGCAGGCAAGGCGCGA
ATCCGCGCGCAACCGCTCGCTCGACGGGCTGGTCGCTGGCGAAGTGGCCGAACAGAGCCGCGCCCGCGTCGAACAGGCCG
AAGCCGCACTGGCACAGGCCGACGCCACCGTACGCCTTGCGCGCCTGAACCTGGAGCGCACCAGCGTGCTCAGCCCCGCC
GACGGCTATCTCAATGACCGCCTGCCGCGGCTGGGCGACTACGTTTCCACCGGACGGCCCGTGCTGTCCATGGTCGATTC
CGCGTCGTTCCATGTGGAAGGCTATTTCGAGGAAACCAAGCTGCACCGCATCCACATCGGCAGCCCGGTCGACGTACATA
TCATGGGCGAGCCACACCATCTGCGCGGCCACGTGCAGAGCATCGCCGCCGGCATCGAGGACCGGGACCGCAGCGCCGGC
TCCAACCTGCTGCCGAACGTAAACCCGACGTTCAACTGGGTGCGGTTGGCGCAGCGCGTGCCCGTGCGCATCACGTTTGA
TGCGGTCCCGCCGGAGGTGCGACTGATTTCGGGACGCACGGCCACAGTGTCCGTGCAGCAGCCAGTCGCGGAGCGCAAGC
CGTGA

Upstream 100 bases:

>100_bases
TCGGGTTCTACCGGCACGTGTGGCATCGCTCCCTCTTCAATCTCTGCCTCTATGTGATCGTCCTGGGCGGCGTCGTCGCC
CTCGGTCTGAGGCTGCCGAC

Downstream 100 bases:

>100_bases
GGATATGGCTATGGATATGGCTAATGCCACTGGTGCCGGCCTTGTTCGCGTGCACCACAGTCGGACCGGATTACCACTTA
CCGGACACCGCCGCCGTACG

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTFRFRPLFRLLPTLLALLAAVLVLRHLWDYYTAAPWTRDGHVRADIVQIAPDVSGLVTRVLVHDNQQVRRGQVLFEIDR
DRYALALQQATANAAALRATLTQARRESARNRSLDGLVAGEVAEQSRARVEQAEAALAQADATVRLARLNLERTSVLSPA
DGYLNDRLPRLGDYVSTGRPVLSMVDSASFHVEGYFEETKLHRIHIGSPVDVHIMGEPHHLRGHVQSIAAGIEDRDRSAG
SNLLPNVNPTFNWVRLAQRVPVRITFDAVPPEVRLISGRTATVSVQQPVAERKP

Sequences:

>Translated_294_residues
MTFRFRPLFRLLPTLLALLAAVLVLRHLWDYYTAAPWTRDGHVRADIVQIAPDVSGLVTRVLVHDNQQVRRGQVLFEIDR
DRYALALQQATANAAALRATLTQARRESARNRSLDGLVAGEVAEQSRARVEQAEAALAQADATVRLARLNLERTSVLSPA
DGYLNDRLPRLGDYVSTGRPVLSMVDSASFHVEGYFEETKLHRIHIGSPVDVHIMGEPHHLRGHVQSIAAGIEDRDRSAG
SNLLPNVNPTFNWVRLAQRVPVRITFDAVPPEVRLISGRTATVSVQQPVAERKP
>Mature_293_residues
TFRFRPLFRLLPTLLALLAAVLVLRHLWDYYTAAPWTRDGHVRADIVQIAPDVSGLVTRVLVHDNQQVRRGQVLFEIDRD
RYALALQQATANAAALRATLTQARRESARNRSLDGLVAGEVAEQSRARVEQAEAALAQADATVRLARLNLERTSVLSPAD
GYLNDRLPRLGDYVSTGRPVLSMVDSASFHVEGYFEETKLHRIHIGSPVDVHIMGEPHHLRGHVQSIAAGIEDRDRSAGS
NLLPNVNPTFNWVRLAQRVPVRITFDAVPPEVRLISGRTATVSVQQPVAERKP

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=280, Percent_Identity=38.9285714285714, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1789637, Length=292, Percent_Identity=38.013698630137, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1790519, Length=295, Percent_Identity=29.4915254237288, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789041, Length=295, Percent_Identity=28.8135593220339, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788711, Length=342, Percent_Identity=28.0701754385965, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87082036, Length=176, Percent_Identity=27.8409090909091, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 32682; Mature: 32551

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRFRPLFRLLPTLLALLAAVLVLRHLWDYYTAAPWTRDGHVRADIVQIAPDVSGLVTR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHEECCCCHHHHHHH
VLVHDNQQVRRGQVLFEIDRDRYALALQQATANAAALRATLTQARRESARNRSLDGLVAG
HHHCCCCHHHCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EVAEQSRARVEQAEAALAQADATVRLARLNLERTSVLSPADGYLNDRLPRLGDYVSTGRP
HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCHHHCCCHHHHHHHHCCCH
VLSMVDSASFHVEGYFEETKLHRIHIGSPVDVHIMGEPHHLRGHVQSIAAGIEDRDRSAG
HHHHHCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCHHCCCCC
SNLLPNVNPTFNWVRLAQRVPVRITFDAVPPEVRLISGRTATVSVQQPVAERKP
CCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEECCCHHCCCC
>Mature Secondary Structure 
TFRFRPLFRLLPTLLALLAAVLVLRHLWDYYTAAPWTRDGHVRADIVQIAPDVSGLVTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHEECCCCHHHHHHH
VLVHDNQQVRRGQVLFEIDRDRYALALQQATANAAALRATLTQARRESARNRSLDGLVAG
HHHCCCCHHHCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EVAEQSRARVEQAEAALAQADATVRLARLNLERTSVLSPADGYLNDRLPRLGDYVSTGRP
HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCHHHCCCHHHHHHHHCCCH
VLSMVDSASFHVEGYFEETKLHRIHIGSPVDVHIMGEPHHLRGHVQSIAAGIEDRDRSAG
HHHHHCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCHHCCCCC
SNLLPNVNPTFNWVRLAQRVPVRITFDAVPPEVRLISGRTATVSVQQPVAERKP
CCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCEEEECCCEEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]