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The map label for this gene is ubiD

Identifier: 71892388

GI number: 71892388

Start: 773904

End: 775367

Strand: Reverse

Name: ubiD

Synonym: BPEN_647

Alternate gene names: 71892388

Gene position: 775367-773904 (Counterclockwise)

Preceding gene: 71892389

Following gene: 71892387

Centisome position: 97.94

GC content: 34.7

Gene sequence:

>1464_bases
ATGAAATATAAAGATTTACGTGATTTTATAAAAATATTAGAACATAGGGGAGACTTAAAAAGAATTAAATTTCCTATTAA
TCCTGATTTGGAAATAACAGAAATTGCTGATCGCACTATTAAATCTGGAGGACCAGCGCTTTTTTTTGAAAATCCTACAG
GATATACAATACCTGTTCTTTGTAATTTATTTGGTACTCCTAATAGAATAGCTTTAGGAATGGGAAAAGAAAGCATCTTA
TCTTTGCGTGATGTTGGAAAATTACTTGCCTTTTTAAGAGAACCTGAATTACCGACAGGAGTGCATGATTTTTTTTCTAA
AATACCTCATTTTCGTCATATCCTACATATGCCTATTAAGCGCGTCAGTACAGCTCCATGCCAAGAAAATGTTTGGTGCA
ATCAAGATGTAGATATCACACATATGCCAATAATGCGTTGCTGGCCTCAAGACGTATCTCCTGTAATTACTTGGGGTATC
ACGATAACGCGTGGTCTGAAAAGTAAACGACAAAATCTTGGAATTTATCGTCAACAAGTACTATCTAAAAACAAAATCAT
TATGAGATGGTTATCTCATCGTGGCGGTGCATTAGATTTTCAAGAATGGCATAAAAATACTTCAGAGAGAAGATTTCCAA
TTACTGTAGCATTAGGCGCTGATCCAGCTACTTTAATAGGAGCAGTAGTTCCCATTCCTGATACACTATCAGAATATGCT
TTTTCTGGTTTACTAAGAGGTTGTAGAACTGAAGTAATTAAATGTATTTCATGCGACTTAGACGTTCCAGCTAATTCTGA
AATTGTATTGGAAGGGTATTTAGAACGAGATGAGACAGCAATAGAAGGCCCCTTTGGAGATCATACAGGATATTACAATA
CTACTGCTAAATTTCCAGTATGCACTATTACCCATATTACACAACGGAACAATCCAATTTATCTTTCTACGTATACTGGT
CGTCCACCAGATGAACCTGCAATTCTTGGAATGGCAATGAATGAAATGTTCATCCCTATCATACAAAAGCAATTCCCAGA
AATTACAGATTTTTATTTACCTCCTGAAGGTTGCTCATATAGATTAGCTATTGTAACTATAAAAAAACAATATATTGGAC
ATGCTAAACGTATAATTTTTGGAATATGGTCTTTTTTGAAACAATTTATGTATACTAAATTTATTATCGTATGTGACGAC
GATATTAATGCTCGGGATTGGAATGATGTAGTATGGGCGATAACTACACGCATGGAGCCTGATCGAGATACTATAATAGT
AAAAAATACCCCAATTGATTATCTTGATTTCTCTAGTCCTATTTCTGGTTTAGGCTCTAAAATAGGTATGGATGCAACAA
ATAAATGGCCCGGGGAAACTGAAAGAGAATGGGGTATTCCAATTAAAATGCACGATACGGTACGACATTATATTGATAGT
ATTTGGGATAAACTAGACATATAG

Upstream 100 bases:

>100_bases
ATTAATTCAATCATAACTTTAAAACTGTACTTAATGATAATTATACGATATTTTGTAATATTATTGAATCACAACAACAT
TTAATGATCATTAACAAGTT

Downstream 100 bases:

>100_bases
ACATAATATTTTACAATAAAAAATAATATAATTAAGTAAGATGCACAAAATTAAACACATAGTAGTATGATGGATGTTTT
ACAATAAAAACAAAGAGACA

Product: 3-octaprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKYKDLRDFIKILEHRGDLKRIKFPINPDLEITEIADRTIKSGGPALFFENPTGYTIPVLCNLFGTPNRIALGMGKESIL
SLRDVGKLLAFLREPELPTGVHDFFSKIPHFRHILHMPIKRVSTAPCQENVWCNQDVDITHMPIMRCWPQDVSPVITWGI
TITRGLKSKRQNLGIYRQQVLSKNKIIMRWLSHRGGALDFQEWHKNTSERRFPITVALGADPATLIGAVVPIPDTLSEYA
FSGLLRGCRTEVIKCISCDLDVPANSEIVLEGYLERDETAIEGPFGDHTGYYNTTAKFPVCTITHITQRNNPIYLSTYTG
RPPDEPAILGMAMNEMFIPIIQKQFPEITDFYLPPEGCSYRLAIVTIKKQYIGHAKRIIFGIWSFLKQFMYTKFIIVCDD
DINARDWNDVVWAITTRMEPDRDTIIVKNTPIDYLDFSSPISGLGSKIGMDATNKWPGETEREWGIPIKMHDTVRHYIDS
IWDKLDI

Sequences:

>Translated_487_residues
MKYKDLRDFIKILEHRGDLKRIKFPINPDLEITEIADRTIKSGGPALFFENPTGYTIPVLCNLFGTPNRIALGMGKESIL
SLRDVGKLLAFLREPELPTGVHDFFSKIPHFRHILHMPIKRVSTAPCQENVWCNQDVDITHMPIMRCWPQDVSPVITWGI
TITRGLKSKRQNLGIYRQQVLSKNKIIMRWLSHRGGALDFQEWHKNTSERRFPITVALGADPATLIGAVVPIPDTLSEYA
FSGLLRGCRTEVIKCISCDLDVPANSEIVLEGYLERDETAIEGPFGDHTGYYNTTAKFPVCTITHITQRNNPIYLSTYTG
RPPDEPAILGMAMNEMFIPIIQKQFPEITDFYLPPEGCSYRLAIVTIKKQYIGHAKRIIFGIWSFLKQFMYTKFIIVCDD
DINARDWNDVVWAITTRMEPDRDTIIVKNTPIDYLDFSSPISGLGSKIGMDATNKWPGETEREWGIPIKMHDTVRHYIDS
IWDKLDI
>Mature_487_residues
MKYKDLRDFIKILEHRGDLKRIKFPINPDLEITEIADRTIKSGGPALFFENPTGYTIPVLCNLFGTPNRIALGMGKESIL
SLRDVGKLLAFLREPELPTGVHDFFSKIPHFRHILHMPIKRVSTAPCQENVWCNQDVDITHMPIMRCWPQDVSPVITWGI
TITRGLKSKRQNLGIYRQQVLSKNKIIMRWLSHRGGALDFQEWHKNTSERRFPITVALGADPATLIGAVVPIPDTLSEYA
FSGLLRGCRTEVIKCISCDLDVPANSEIVLEGYLERDETAIEGPFGDHTGYYNTTAKFPVCTITHITQRNNPIYLSTYTG
RPPDEPAILGMAMNEMFIPIIQKQFPEITDFYLPPEGCSYRLAIVTIKKQYIGHAKRIIFGIWSFLKQFMYTKFIIVCDD
DINARDWNDVVWAITTRMEPDRDTIIVKNTPIDYLDFSSPISGLGSKIGMDATNKWPGETEREWGIPIKMHDTVRHYIDS
IWDKLDI

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=70.0205338809035, Blast_Score=768, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=449, Percent_Identity=26.0579064587973, Blast_Score=122, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_BLOPB (Q491V9)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_278122.1
- ProteinModelPortal:   Q491V9
- SMR:   Q491V9
- STRING:   Q491V9
- GeneID:   3562724
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_647
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- ProtClustDB:   CLSK280959
- BioCyc:   CBLO291272:BPEN_647-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55674; Mature: 55674

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKDLRDFIKILEHRGDLKRIKFPINPDLEITEIADRTIKSGGPALFFENPTGYTIPVL
CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
CNLFGTPNRIALGMGKESILSLRDVGKLLAFLREPELPTGVHDFFSKIPHFRHILHMPIK
HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHH
RVSTAPCQENVWCNQDVDITHMPIMRCWPQDVSPVITWGITITRGLKSKRQNLGIYRQQV
HHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCEEHHHHHHHHHCCHHHHHH
LSKNKIIMRWLSHRGGALDFQEWHKNTSERRFPITVALGADPATLIGAVVPIPDTLSEYA
HCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHH
FSGLLRGCRTEVIKCISCDLDVPANSEIVLEGYLERDETAIEGPFGDHTGYYNTTAKFPV
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCE
CTITHITQRNNPIYLSTYTGRPPDEPAILGMAMNEMFIPIIQKQFPEITDFYLPPEGCSY
EEEEEEECCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHCCCCCCCCCCE
RLAIVTIKKQYIGHAKRIIFGIWSFLKQFMYTKFIIVCDDDINARDWNDVVWAITTRMEP
EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
DRDTIIVKNTPIDYLDFSSPISGLGSKIGMDATNKWPGETEREWGIPIKMHDTVRHYIDS
CCCEEEEECCCCCCCCCCCCHHHHCHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH
IWDKLDI
HHHHCCC
>Mature Secondary Structure
MKYKDLRDFIKILEHRGDLKRIKFPINPDLEITEIADRTIKSGGPALFFENPTGYTIPVL
CCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHH
CNLFGTPNRIALGMGKESILSLRDVGKLLAFLREPELPTGVHDFFSKIPHFRHILHMPIK
HCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHH
RVSTAPCQENVWCNQDVDITHMPIMRCWPQDVSPVITWGITITRGLKSKRQNLGIYRQQV
HHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCEEHHHHHHHHHCCHHHHHH
LSKNKIIMRWLSHRGGALDFQEWHKNTSERRFPITVALGADPATLIGAVVPIPDTLSEYA
HCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHH
FSGLLRGCRTEVIKCISCDLDVPANSEIVLEGYLERDETAIEGPFGDHTGYYNTTAKFPV
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCE
CTITHITQRNNPIYLSTYTGRPPDEPAILGMAMNEMFIPIIQKQFPEITDFYLPPEGCSY
EEEEEEECCCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHCCCCCCCCCCE
RLAIVTIKKQYIGHAKRIIFGIWSFLKQFMYTKFIIVCDDDINARDWNDVVWAITTRMEP
EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
DRDTIIVKNTPIDYLDFSSPISGLGSKIGMDATNKWPGETEREWGIPIKMHDTVRHYIDS
CCCEEEEECCCCCCCCCCCCHHHHCHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH
IWDKLDI
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA